Hb_177132_010

Information

Type -
Description -
Location Contig177132: 139-1134
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177132_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000032_060 0.1672558394 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001277_230 0.1941219621 - - -
4 Hb_010642_030 0.2067361864 - - zinc phosphodiesterase, putative [Ricinus communis]
5 Hb_001741_120 0.2195080386 - - hypothetical protein CARUB_v10011543mg, partial [Capsella rubella]
6 Hb_008489_020 0.2347609934 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
7 Hb_002151_080 0.2352382561 - - hypothetical protein MIMGU_mgv1a000572mg [Erythranthe guttata]
8 Hb_005375_040 0.2368083241 - - dicer-1, putative [Ricinus communis]
9 Hb_002374_350 0.2384984112 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
10 Hb_025623_020 0.2387462522 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
11 Hb_002524_010 0.2431441521 - - hypothetical protein POPTR_0006s20250g [Populus trichocarpa]
12 Hb_021596_030 0.2434154304 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
13 Hb_007479_070 0.2436854269 - - peroxisomal membrane protein [Hevea brasiliensis]
14 Hb_005016_060 0.2446658637 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000364_080 0.2447587001 - - PREDICTED: OTU domain-containing protein 3 isoform X1 [Jatropha curcas]
16 Hb_000302_160 0.2474276318 - - PREDICTED: uncharacterized protein LOC105648403 [Jatropha curcas]
17 Hb_000523_090 0.2490108409 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
18 Hb_027472_050 0.2493224851 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
19 Hb_013691_020 0.2511777505 - - transcription initiation factor iie, alpha subunit, putative [Ricinus communis]
20 Hb_002248_030 0.2515430028 - - metallothionein-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_177132_010 Hb_177132_010 Hb_000032_060 Hb_000032_060 Hb_177132_010--Hb_000032_060 Hb_001277_230 Hb_001277_230 Hb_177132_010--Hb_001277_230 Hb_010642_030 Hb_010642_030 Hb_177132_010--Hb_010642_030 Hb_001741_120 Hb_001741_120 Hb_177132_010--Hb_001741_120 Hb_008489_020 Hb_008489_020 Hb_177132_010--Hb_008489_020 Hb_002151_080 Hb_002151_080 Hb_177132_010--Hb_002151_080 Hb_006788_160 Hb_006788_160 Hb_000032_060--Hb_006788_160 Hb_000218_010 Hb_000218_010 Hb_000032_060--Hb_000218_010 Hb_000032_060--Hb_010642_030 Hb_003849_250 Hb_003849_250 Hb_000032_060--Hb_003849_250 Hb_000753_200 Hb_000753_200 Hb_000032_060--Hb_000753_200 Hb_000866_470 Hb_000866_470 Hb_000032_060--Hb_000866_470 Hb_002248_030 Hb_002248_030 Hb_001277_230--Hb_002248_030 Hb_001277_230--Hb_000032_060 Hb_005928_040 Hb_005928_040 Hb_001277_230--Hb_005928_040 Hb_027472_140 Hb_027472_140 Hb_001277_230--Hb_027472_140 Hb_158560_010 Hb_158560_010 Hb_001277_230--Hb_158560_010 Hb_000364_080 Hb_000364_080 Hb_010642_030--Hb_000364_080 Hb_002784_060 Hb_002784_060 Hb_010642_030--Hb_002784_060 Hb_000523_090 Hb_000523_090 Hb_010642_030--Hb_000523_090 Hb_000627_030 Hb_000627_030 Hb_010642_030--Hb_000627_030 Hb_002067_020 Hb_002067_020 Hb_010642_030--Hb_002067_020 Hb_002942_160 Hb_002942_160 Hb_010642_030--Hb_002942_160 Hb_012760_130 Hb_012760_130 Hb_001741_120--Hb_012760_130 Hb_004883_050 Hb_004883_050 Hb_001741_120--Hb_004883_050 Hb_007123_060 Hb_007123_060 Hb_001741_120--Hb_007123_060 Hb_000051_170 Hb_000051_170 Hb_001741_120--Hb_000051_170 Hb_003206_120 Hb_003206_120 Hb_001741_120--Hb_003206_120 Hb_003992_040 Hb_003992_040 Hb_001741_120--Hb_003992_040 Hb_005488_060 Hb_005488_060 Hb_008489_020--Hb_005488_060 Hb_000170_190 Hb_000170_190 Hb_008489_020--Hb_000170_190 Hb_012286_010 Hb_012286_010 Hb_008489_020--Hb_012286_010 Hb_002084_020 Hb_002084_020 Hb_008489_020--Hb_002084_020 Hb_002601_130 Hb_002601_130 Hb_008489_020--Hb_002601_130 Hb_006915_070 Hb_006915_070 Hb_008489_020--Hb_006915_070 Hb_000230_040 Hb_000230_040 Hb_002151_080--Hb_000230_040 Hb_002151_080--Hb_000032_060 Hb_000088_020 Hb_000088_020 Hb_002151_080--Hb_000088_020 Hb_002151_080--Hb_000523_090 Hb_000181_180 Hb_000181_180 Hb_002151_080--Hb_000181_180 Hb_003061_010 Hb_003061_010 Hb_002151_080--Hb_003061_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0533617 0.111601 0.0412806 0.0240769 0.051804 0.17257
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.122572 0.0481934 0 0.0194602 0.0974162

CAGE analysis