Hb_006869_010

Information

Type -
Description -
Location Contig6869: 6211-7948
Sequence    

Annotation

kegg
ID -
description -
nr
ID CDP07807.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068UHQ6
description Coffea canephora DH200=94 genomic scaffold, scaffold_27 OS=Coffea canephora GN=GSCOC_T00025197001 PE=4 SV=1
Gene Ontology
ID GO:0004672
description scy1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006869_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_002027_150 0.2314449592 - - -
3 Hb_001401_080 0.2400324765 - - PREDICTED: protein TIC 22, chloroplastic [Jatropha curcas]
4 Hb_000752_050 0.2675138378 - - PREDICTED: uncharacterized protein LOC102610887 [Citrus sinensis]
5 Hb_006269_050 0.2800600085 - - hypothetical protein POPTR_0004s13450g [Populus trichocarpa]
6 Hb_005565_060 0.2809301762 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 isoform X1 [Jatropha curcas]
7 Hb_000982_110 0.2874804637 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
8 Hb_002304_020 0.2938323889 - - -
9 Hb_035935_010 0.3027997541 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
10 Hb_000661_080 0.3030039719 - - monoxygenase, putative [Ricinus communis]
11 Hb_000589_150 0.3040688182 - - PREDICTED: factor of DNA methylation 1-like isoform X1 [Beta vulgaris subsp. vulgaris]
12 Hb_000376_160 0.3050096213 - - -
13 Hb_003376_080 0.3080371708 - - PREDICTED: uncharacterized protein LOC105642190 isoform X1 [Jatropha curcas]
14 Hb_002602_020 0.3088362753 - - -
15 Hb_006788_160 0.3127300959 - - hypothetical protein POPTR_0002s04680g [Populus trichocarpa]
16 Hb_001481_180 0.3140422469 - - plasma membrane H+-ATPase [Hevea brasiliensis]
17 Hb_000003_360 0.3149007683 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
18 Hb_003497_040 0.3151743803 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000270_290 0.315333118 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
20 Hb_000703_270 0.3157857319 - - hypothetical protein B456_012G039600 [Gossypium raimondii]

Gene co-expression network

sample Hb_006869_010 Hb_006869_010 Hb_002027_150 Hb_002027_150 Hb_006869_010--Hb_002027_150 Hb_001401_080 Hb_001401_080 Hb_006869_010--Hb_001401_080 Hb_000752_050 Hb_000752_050 Hb_006869_010--Hb_000752_050 Hb_006269_050 Hb_006269_050 Hb_006869_010--Hb_006269_050 Hb_005565_060 Hb_005565_060 Hb_006869_010--Hb_005565_060 Hb_000982_110 Hb_000982_110 Hb_006869_010--Hb_000982_110 Hb_033363_070 Hb_033363_070 Hb_002027_150--Hb_033363_070 Hb_000097_010 Hb_000097_010 Hb_002027_150--Hb_000097_010 Hb_001571_110 Hb_001571_110 Hb_002027_150--Hb_001571_110 Hb_001017_060 Hb_001017_060 Hb_002027_150--Hb_001017_060 Hb_001301_050 Hb_001301_050 Hb_002027_150--Hb_001301_050 Hb_006132_070 Hb_006132_070 Hb_001401_080--Hb_006132_070 Hb_003497_040 Hb_003497_040 Hb_001401_080--Hb_003497_040 Hb_005725_260 Hb_005725_260 Hb_001401_080--Hb_005725_260 Hb_000030_180 Hb_000030_180 Hb_001401_080--Hb_000030_180 Hb_001922_170 Hb_001922_170 Hb_001401_080--Hb_001922_170 Hb_004724_460 Hb_004724_460 Hb_001401_080--Hb_004724_460 Hb_000752_050--Hb_005725_260 Hb_030131_010 Hb_030131_010 Hb_000752_050--Hb_030131_010 Hb_003435_010 Hb_003435_010 Hb_000752_050--Hb_003435_010 Hb_000796_170 Hb_000796_170 Hb_000752_050--Hb_000796_170 Hb_004586_200 Hb_004586_200 Hb_000752_050--Hb_004586_200 Hb_143766_050 Hb_143766_050 Hb_006269_050--Hb_143766_050 Hb_004871_040 Hb_004871_040 Hb_006269_050--Hb_004871_040 Hb_012627_030 Hb_012627_030 Hb_006269_050--Hb_012627_030 Hb_001545_140 Hb_001545_140 Hb_006269_050--Hb_001545_140 Hb_003683_120 Hb_003683_120 Hb_006269_050--Hb_003683_120 Hb_182305_020 Hb_182305_020 Hb_006269_050--Hb_182305_020 Hb_019762_020 Hb_019762_020 Hb_005565_060--Hb_019762_020 Hb_001252_210 Hb_001252_210 Hb_005565_060--Hb_001252_210 Hb_003025_040 Hb_003025_040 Hb_005565_060--Hb_003025_040 Hb_002221_070 Hb_002221_070 Hb_005565_060--Hb_002221_070 Hb_002518_210 Hb_002518_210 Hb_005565_060--Hb_002518_210 Hb_024758_010 Hb_024758_010 Hb_005565_060--Hb_024758_010 Hb_002067_020 Hb_002067_020 Hb_000982_110--Hb_002067_020 Hb_010642_030 Hb_010642_030 Hb_000982_110--Hb_010642_030 Hb_153533_010 Hb_153533_010 Hb_000982_110--Hb_153533_010 Hb_008489_020 Hb_008489_020 Hb_000982_110--Hb_008489_020 Hb_003405_050 Hb_003405_050 Hb_000982_110--Hb_003405_050 Hb_005488_060 Hb_005488_060 Hb_000982_110--Hb_005488_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.126968 0 0 0.0401635 0.0391119 0.0884924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0900333 0.141539 0 0.0288971 0.138578

CAGE analysis