Hb_003435_010

Information

Type -
Description -
Location Contig3435: 56743-58335
Sequence    

Annotation

kegg
ID rcu:RCOM_1353390
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_012082605.1
description PREDICTED: ras-related protein RABC2a-like [Jatropha curcas]
swissprot
ID O49841
description Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1
trembl
ID A0A067JYZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16580 PE=3 SV=1
Gene Ontology
ID GO:0005525
description ras-related protein rabc2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003435_010 0.0 - - PREDICTED: ras-related protein RABC2a-like [Jatropha curcas]
2 Hb_000009_660 0.2363972019 - - -
3 Hb_000116_360 0.2420419858 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
4 Hb_000120_290 0.248969586 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]
5 Hb_002447_080 0.2496742439 - - Angio-associated migratory cell protein, putative [Ricinus communis]
6 Hb_183086_050 0.2504001556 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
7 Hb_001976_040 0.2581970655 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
8 Hb_040734_010 0.2668188704 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
9 Hb_001435_020 0.2706243598 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
10 Hb_004117_350 0.2709439536 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
11 Hb_002221_070 0.2709711474 - - beta-glucanase, putative [Ricinus communis]
12 Hb_007747_210 0.27283445 - - unnamed protein product [Vitis vinifera]
13 Hb_003126_070 0.2739337267 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
14 Hb_010128_100 0.2747625041 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
15 Hb_000362_190 0.2751387691 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
16 Hb_004897_010 0.2754466644 - - -
17 Hb_011249_020 0.2756947113 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
18 Hb_000052_020 0.2766896083 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
19 Hb_006154_020 0.2771072739 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
20 Hb_005565_060 0.2773969343 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003435_010 Hb_003435_010 Hb_000009_660 Hb_000009_660 Hb_003435_010--Hb_000009_660 Hb_000116_360 Hb_000116_360 Hb_003435_010--Hb_000116_360 Hb_000120_290 Hb_000120_290 Hb_003435_010--Hb_000120_290 Hb_002447_080 Hb_002447_080 Hb_003435_010--Hb_002447_080 Hb_183086_050 Hb_183086_050 Hb_003435_010--Hb_183086_050 Hb_001976_040 Hb_001976_040 Hb_003435_010--Hb_001976_040 Hb_004734_040 Hb_004734_040 Hb_000009_660--Hb_004734_040 Hb_000009_660--Hb_002447_080 Hb_001369_250 Hb_001369_250 Hb_000009_660--Hb_001369_250 Hb_003994_120 Hb_003994_120 Hb_000009_660--Hb_003994_120 Hb_000903_060 Hb_000903_060 Hb_000009_660--Hb_000903_060 Hb_007423_050 Hb_007423_050 Hb_000009_660--Hb_007423_050 Hb_010422_070 Hb_010422_070 Hb_000116_360--Hb_010422_070 Hb_000208_180 Hb_000208_180 Hb_000116_360--Hb_000208_180 Hb_000457_290 Hb_000457_290 Hb_000116_360--Hb_000457_290 Hb_004317_030 Hb_004317_030 Hb_000116_360--Hb_004317_030 Hb_000056_070 Hb_000056_070 Hb_000116_360--Hb_000056_070 Hb_000260_620 Hb_000260_620 Hb_000116_360--Hb_000260_620 Hb_002811_010 Hb_002811_010 Hb_000120_290--Hb_002811_010 Hb_005731_160 Hb_005731_160 Hb_000120_290--Hb_005731_160 Hb_012627_040 Hb_012627_040 Hb_000120_290--Hb_012627_040 Hb_002811_130 Hb_002811_130 Hb_000120_290--Hb_002811_130 Hb_003376_230 Hb_003376_230 Hb_000120_290--Hb_003376_230 Hb_000465_190 Hb_000465_190 Hb_000120_290--Hb_000465_190 Hb_003020_280 Hb_003020_280 Hb_002447_080--Hb_003020_280 Hb_005488_020 Hb_005488_020 Hb_002447_080--Hb_005488_020 Hb_000071_170 Hb_000071_170 Hb_002447_080--Hb_000071_170 Hb_002447_080--Hb_003994_120 Hb_005054_230 Hb_005054_230 Hb_002447_080--Hb_005054_230 Hb_004450_040 Hb_004450_040 Hb_002447_080--Hb_004450_040 Hb_000300_660 Hb_000300_660 Hb_183086_050--Hb_000300_660 Hb_006154_020 Hb_006154_020 Hb_183086_050--Hb_006154_020 Hb_003687_250 Hb_003687_250 Hb_183086_050--Hb_003687_250 Hb_015934_120 Hb_015934_120 Hb_183086_050--Hb_015934_120 Hb_000613_070 Hb_000613_070 Hb_183086_050--Hb_000613_070 Hb_000186_050 Hb_000186_050 Hb_183086_050--Hb_000186_050 Hb_000465_070 Hb_000465_070 Hb_001976_040--Hb_000465_070 Hb_002609_200 Hb_002609_200 Hb_001976_040--Hb_002609_200 Hb_007827_010 Hb_007827_010 Hb_001976_040--Hb_007827_010 Hb_000035_480 Hb_000035_480 Hb_001976_040--Hb_000035_480 Hb_001489_090 Hb_001489_090 Hb_001976_040--Hb_001489_090 Hb_001910_010 Hb_001910_010 Hb_001976_040--Hb_001910_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.411031 0.0495071 0.0444097 0.272964 0.112458 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.540402 0.318407 0.179657 0.308972 0.594719

CAGE analysis