Hb_006154_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig6154: 37412-38971
Sequence    

Annotation

kegg
ID rcu:RCOM_1621120
description hypothetical protein
nr
ID XP_002512106.1
description hypothetical protein RCOM_1621120 [Ricinus communis]
swissprot
ID Q9SHD0
description Zinc finger protein ZAT4 OS=Arabidopsis thaliana GN=ZAT4 PE=2 SV=1
trembl
ID B9REG7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1621120 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51209: 36890-37238 , PASA_asmbl_51210: 37431-37680 , PASA_asmbl_51212: 38505-38781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006154_020 0.0 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
2 Hb_001124_100 0.1189044189 - - PREDICTED: vesicle-associated protein 2-2-like isoform X1 [Jatropha curcas]
3 Hb_008699_030 0.1552447134 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
4 Hb_183086_050 0.1642492283 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
5 Hb_113818_010 0.1751511151 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
6 Hb_003687_250 0.1911844572 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
7 Hb_008053_050 0.1941066604 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
8 Hb_000656_330 0.1949502293 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
9 Hb_002325_070 0.1957334515 - - ATP binding protein, putative [Ricinus communis]
10 Hb_003453_050 0.1974891749 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
11 Hb_069355_010 0.1986032541 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
12 Hb_010883_190 0.202759478 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000310_100 0.2036158909 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000946_110 0.2096794301 - - GTP cyclohydrolase I, putative [Ricinus communis]
15 Hb_000189_480 0.211270984 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
16 Hb_002007_340 0.2127414938 - - cyclin-dependent protein kinase, putative [Ricinus communis]
17 Hb_000114_150 0.2138303175 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
18 Hb_000062_400 0.2147223104 - - conserved hypothetical protein [Ricinus communis]
19 Hb_027073_010 0.2177923558 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
20 Hb_015675_030 0.2179294205 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006154_020 Hb_006154_020 Hb_001124_100 Hb_001124_100 Hb_006154_020--Hb_001124_100 Hb_008699_030 Hb_008699_030 Hb_006154_020--Hb_008699_030 Hb_183086_050 Hb_183086_050 Hb_006154_020--Hb_183086_050 Hb_113818_010 Hb_113818_010 Hb_006154_020--Hb_113818_010 Hb_003687_250 Hb_003687_250 Hb_006154_020--Hb_003687_250 Hb_008053_050 Hb_008053_050 Hb_006154_020--Hb_008053_050 Hb_001124_100--Hb_113818_010 Hb_001124_100--Hb_008699_030 Hb_000310_100 Hb_000310_100 Hb_001124_100--Hb_000310_100 Hb_027073_010 Hb_027073_010 Hb_001124_100--Hb_027073_010 Hb_002804_040 Hb_002804_040 Hb_001124_100--Hb_002804_040 Hb_015675_030 Hb_015675_030 Hb_008699_030--Hb_015675_030 Hb_000240_030 Hb_000240_030 Hb_008699_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_008699_030--Hb_001195_070 Hb_003207_020 Hb_003207_020 Hb_008699_030--Hb_003207_020 Hb_000946_110 Hb_000946_110 Hb_008699_030--Hb_000946_110 Hb_000300_660 Hb_000300_660 Hb_183086_050--Hb_000300_660 Hb_183086_050--Hb_003687_250 Hb_015934_120 Hb_015934_120 Hb_183086_050--Hb_015934_120 Hb_000613_070 Hb_000613_070 Hb_183086_050--Hb_000613_070 Hb_000186_050 Hb_000186_050 Hb_183086_050--Hb_000186_050 Hb_000189_480 Hb_000189_480 Hb_113818_010--Hb_000189_480 Hb_113818_010--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_113818_010--Hb_001504_030 Hb_002289_060 Hb_002289_060 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_009661_030 Hb_009661_030 Hb_113818_010--Hb_009661_030 Hb_015978_110 Hb_015978_110 Hb_003687_250--Hb_015978_110 Hb_001369_700 Hb_001369_700 Hb_003687_250--Hb_001369_700 Hb_000172_380 Hb_000172_380 Hb_003687_250--Hb_000172_380 Hb_003687_250--Hb_113818_010 Hb_009780_030 Hb_009780_030 Hb_008053_050--Hb_009780_030 Hb_007508_060 Hb_007508_060 Hb_008053_050--Hb_007508_060 Hb_002325_070 Hb_002325_070 Hb_008053_050--Hb_002325_070 Hb_008053_050--Hb_113818_010 Hb_008053_050--Hb_002289_060 Hb_000913_020 Hb_000913_020 Hb_008053_050--Hb_000913_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.02223 0.482185 0.716956 3.74966 0.190154 0.256312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55242 0.798578 1.59096 0.70278 4.13415

CAGE analysis