Hb_008053_050

Information

Type -
Description -
Location Contig8053: 75600-81330
Sequence    

Annotation

kegg
ID pop:POPTR_0014s08030g
description POPTRDRAFT_572258; hypothetical protein
nr
ID XP_012083387.1
description PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
swissprot
ID F4HSD5
description Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1
trembl
ID A0A067K0N3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14394 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59024: 79050-81282 , PASA_asmbl_59025: 81285-81457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008053_050 0.0 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]
2 Hb_009780_030 0.1201768118 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
3 Hb_007508_060 0.1391946079 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
4 Hb_002325_070 0.1431558599 - - ATP binding protein, putative [Ricinus communis]
5 Hb_113818_010 0.1438111316 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
6 Hb_002289_060 0.1501090166 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000913_020 0.1522117218 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
8 Hb_015934_120 0.1570368937 - - PREDICTED: callose synthase 7 [Vitis vinifera]
9 Hb_004672_040 0.1571093105 - - PREDICTED: SEC1 family transport protein SLY1-like [Populus euphratica]
10 Hb_004052_040 0.1571146988 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
11 Hb_001369_710 0.1571727275 - - PREDICTED: uncharacterized protein LOC105648579 isoform X1 [Jatropha curcas]
12 Hb_001314_080 0.1577718275 - - hypothetical protein POPTR_0018s14330g [Populus trichocarpa]
13 Hb_000085_400 0.1582675258 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
14 Hb_001049_090 0.1599599784 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
15 Hb_000665_130 0.1600808083 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
16 Hb_010883_040 0.1605538917 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 1 [Jatropha curcas]
17 Hb_034585_010 0.1612661354 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
18 Hb_010883_190 0.1628480726 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000335_030 0.1632092226 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
20 Hb_032202_040 0.1637968865 - - PREDICTED: phospholipase D beta 2 [Jatropha curcas]

Gene co-expression network

sample Hb_008053_050 Hb_008053_050 Hb_009780_030 Hb_009780_030 Hb_008053_050--Hb_009780_030 Hb_007508_060 Hb_007508_060 Hb_008053_050--Hb_007508_060 Hb_002325_070 Hb_002325_070 Hb_008053_050--Hb_002325_070 Hb_113818_010 Hb_113818_010 Hb_008053_050--Hb_113818_010 Hb_002289_060 Hb_002289_060 Hb_008053_050--Hb_002289_060 Hb_000913_020 Hb_000913_020 Hb_008053_050--Hb_000913_020 Hb_009780_030--Hb_000913_020 Hb_000768_200 Hb_000768_200 Hb_009780_030--Hb_000768_200 Hb_009780_030--Hb_007508_060 Hb_000207_330 Hb_000207_330 Hb_009780_030--Hb_000207_330 Hb_028697_010 Hb_028697_010 Hb_009780_030--Hb_028697_010 Hb_001163_100 Hb_001163_100 Hb_009780_030--Hb_001163_100 Hb_007508_060--Hb_000913_020 Hb_000665_130 Hb_000665_130 Hb_007508_060--Hb_000665_130 Hb_007508_060--Hb_001163_100 Hb_000340_230 Hb_000340_230 Hb_007508_060--Hb_000340_230 Hb_005686_090 Hb_005686_090 Hb_007508_060--Hb_005686_090 Hb_010883_190 Hb_010883_190 Hb_002325_070--Hb_010883_190 Hb_002344_100 Hb_002344_100 Hb_002325_070--Hb_002344_100 Hb_003911_020 Hb_003911_020 Hb_002325_070--Hb_003911_020 Hb_000704_040 Hb_000704_040 Hb_002325_070--Hb_000704_040 Hb_002639_020 Hb_002639_020 Hb_002325_070--Hb_002639_020 Hb_000679_230 Hb_000679_230 Hb_002325_070--Hb_000679_230 Hb_000189_480 Hb_000189_480 Hb_113818_010--Hb_000189_480 Hb_015934_120 Hb_015934_120 Hb_113818_010--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_113818_010--Hb_001504_030 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_009661_030 Hb_009661_030 Hb_113818_010--Hb_009661_030 Hb_000062_540 Hb_000062_540 Hb_002289_060--Hb_000062_540 Hb_001946_180 Hb_001946_180 Hb_002289_060--Hb_001946_180 Hb_001157_230 Hb_001157_230 Hb_002289_060--Hb_001157_230 Hb_001876_040 Hb_001876_040 Hb_002289_060--Hb_001876_040 Hb_001916_090 Hb_001916_090 Hb_002289_060--Hb_001916_090 Hb_034585_010 Hb_034585_010 Hb_002289_060--Hb_034585_010 Hb_000497_300 Hb_000497_300 Hb_000913_020--Hb_000497_300 Hb_000913_020--Hb_000340_230 Hb_002988_040 Hb_002988_040 Hb_000913_020--Hb_002988_040 Hb_000913_020--Hb_001163_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.04861 3.5614 2.03993 8.93424 1.78766 3.85162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.65957 2.34108 7.38806 1.96018 9.05978

CAGE analysis