Hb_001369_700

Information

Type -
Description -
Location Contig1369: 552942-554446
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_700 0.0 - - -
2 Hb_011053_020 0.1359890749 - - lipoic acid synthetase, putative [Ricinus communis]
3 Hb_000473_060 0.1401286353 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
4 Hb_000023_210 0.1483775282 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
5 Hb_007002_010 0.1519558054 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
6 Hb_183963_010 0.1690059562 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
7 Hb_000012_010 0.1698336991 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
8 Hb_002534_030 0.1814598439 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
9 Hb_004109_160 0.1825012136 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
10 Hb_003952_050 0.1878743025 - - beta-galactosidase, putative [Ricinus communis]
11 Hb_005588_110 0.190469182 - - hypothetical protein POPTR_0002s12860g [Populus trichocarpa]
12 Hb_002078_300 0.1905806651 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
13 Hb_000683_080 0.193036503 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
14 Hb_000890_110 0.1940812359 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
15 Hb_000521_090 0.1942856956 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
16 Hb_000495_080 0.1971215652 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
17 Hb_002681_080 0.1973302504 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
18 Hb_000352_220 0.1984590599 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
19 Hb_000189_520 0.1988737913 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
20 Hb_000402_170 0.202893435 - - PREDICTED: glutamate--glyoxylate aminotransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_700 Hb_001369_700 Hb_011053_020 Hb_011053_020 Hb_001369_700--Hb_011053_020 Hb_000473_060 Hb_000473_060 Hb_001369_700--Hb_000473_060 Hb_000023_210 Hb_000023_210 Hb_001369_700--Hb_000023_210 Hb_007002_010 Hb_007002_010 Hb_001369_700--Hb_007002_010 Hb_183963_010 Hb_183963_010 Hb_001369_700--Hb_183963_010 Hb_000012_010 Hb_000012_010 Hb_001369_700--Hb_000012_010 Hb_011053_020--Hb_183963_010 Hb_011053_020--Hb_007002_010 Hb_011053_020--Hb_000012_010 Hb_011053_020--Hb_000023_210 Hb_000866_050 Hb_000866_050 Hb_011053_020--Hb_000866_050 Hb_000189_520 Hb_000189_520 Hb_011053_020--Hb_000189_520 Hb_004109_160 Hb_004109_160 Hb_000473_060--Hb_004109_160 Hb_001621_060 Hb_001621_060 Hb_000473_060--Hb_001621_060 Hb_000473_060--Hb_011053_020 Hb_000473_060--Hb_000189_520 Hb_002078_300 Hb_002078_300 Hb_000473_060--Hb_002078_300 Hb_000402_170 Hb_000402_170 Hb_000023_210--Hb_000402_170 Hb_002304_180 Hb_002304_180 Hb_000023_210--Hb_002304_180 Hb_000300_020 Hb_000300_020 Hb_000023_210--Hb_000300_020 Hb_000023_210--Hb_007002_010 Hb_000684_280 Hb_000684_280 Hb_000023_210--Hb_000684_280 Hb_000352_220 Hb_000352_220 Hb_007002_010--Hb_000352_220 Hb_000890_110 Hb_000890_110 Hb_007002_010--Hb_000890_110 Hb_000495_080 Hb_000495_080 Hb_007002_010--Hb_000495_080 Hb_000683_080 Hb_000683_080 Hb_007002_010--Hb_000683_080 Hb_005228_040 Hb_005228_040 Hb_183963_010--Hb_005228_040 Hb_183963_010--Hb_000866_050 Hb_026314_030 Hb_026314_030 Hb_183963_010--Hb_026314_030 Hb_011053_030 Hb_011053_030 Hb_183963_010--Hb_011053_030 Hb_183963_010--Hb_000023_210 Hb_000012_010--Hb_002304_180 Hb_000012_010--Hb_000189_520 Hb_000012_010--Hb_000023_210 Hb_000667_140 Hb_000667_140 Hb_000012_010--Hb_000667_140 Hb_000012_010--Hb_000866_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.235152 0.0827673 0.288848 1.01424 0.114249 0.295697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.375932 0.295479 0.520371 0.0906298 3.31274

CAGE analysis