Hb_000473_060

Information

Type -
Description -
Location Contig473: 67998-78050
Sequence    

Annotation

kegg
ID rcu:RCOM_0080260
description hypothetical protein
nr
ID XP_012081958.1
description PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
swissprot
ID Q8VY52
description PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPD2 PE=1 SV=1
trembl
ID A0A067K004
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19291 PE=4 SV=1
Gene Ontology
ID GO:0009654
description psbp domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44415: 68221-77217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_060 0.0 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
2 Hb_004109_160 0.0989579544 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
3 Hb_001621_060 0.1185582661 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
4 Hb_011053_020 0.1350466363 - - lipoic acid synthetase, putative [Ricinus communis]
5 Hb_001369_700 0.1401286353 - - -
6 Hb_000189_520 0.1457552784 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
7 Hb_002078_300 0.1520286491 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
8 Hb_000866_050 0.1526108029 - - phosphate transporter [Manihot esculenta]
9 Hb_000023_210 0.1563658192 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
10 Hb_001792_030 0.1602994198 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
11 Hb_000723_290 0.1611531648 - - calcium lipid binding protein, putative [Ricinus communis]
12 Hb_007002_010 0.1624678083 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
13 Hb_183963_010 0.1638330997 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
14 Hb_010577_040 0.163982677 - - PREDICTED: uncharacterized protein LOC105643738 [Jatropha curcas]
15 Hb_000012_010 0.1659988198 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
16 Hb_000254_140 0.1674697757 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
17 Hb_003935_080 0.1675050293 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
18 Hb_019613_010 0.1685134815 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000300_020 0.1703696029 - - PREDICTED: grpE protein homolog, mitochondrial [Jatropha curcas]
20 Hb_020378_060 0.1731345861 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000473_060 Hb_000473_060 Hb_004109_160 Hb_004109_160 Hb_000473_060--Hb_004109_160 Hb_001621_060 Hb_001621_060 Hb_000473_060--Hb_001621_060 Hb_011053_020 Hb_011053_020 Hb_000473_060--Hb_011053_020 Hb_001369_700 Hb_001369_700 Hb_000473_060--Hb_001369_700 Hb_000189_520 Hb_000189_520 Hb_000473_060--Hb_000189_520 Hb_002078_300 Hb_002078_300 Hb_000473_060--Hb_002078_300 Hb_000723_290 Hb_000723_290 Hb_004109_160--Hb_000723_290 Hb_004109_160--Hb_002078_300 Hb_004109_160--Hb_001621_060 Hb_010577_040 Hb_010577_040 Hb_004109_160--Hb_010577_040 Hb_000254_140 Hb_000254_140 Hb_004109_160--Hb_000254_140 Hb_001792_030 Hb_001792_030 Hb_001621_060--Hb_001792_030 Hb_001621_060--Hb_010577_040 Hb_001621_060--Hb_000189_520 Hb_008698_010 Hb_008698_010 Hb_001621_060--Hb_008698_010 Hb_003935_080 Hb_003935_080 Hb_001621_060--Hb_003935_080 Hb_183963_010 Hb_183963_010 Hb_011053_020--Hb_183963_010 Hb_007002_010 Hb_007002_010 Hb_011053_020--Hb_007002_010 Hb_000012_010 Hb_000012_010 Hb_011053_020--Hb_000012_010 Hb_000023_210 Hb_000023_210 Hb_011053_020--Hb_000023_210 Hb_000866_050 Hb_000866_050 Hb_011053_020--Hb_000866_050 Hb_011053_020--Hb_000189_520 Hb_001369_700--Hb_011053_020 Hb_001369_700--Hb_000023_210 Hb_001369_700--Hb_007002_010 Hb_001369_700--Hb_183963_010 Hb_001369_700--Hb_000012_010 Hb_000189_520--Hb_001792_030 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_005725_220 Hb_005725_220 Hb_002078_300--Hb_005725_220 Hb_000164_140 Hb_000164_140 Hb_002078_300--Hb_000164_140 Hb_005846_030 Hb_005846_030 Hb_002078_300--Hb_005846_030 Hb_002078_300--Hb_001792_030 Hb_003941_030 Hb_003941_030 Hb_002078_300--Hb_003941_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.284274 0.148541 1.57634 3.82192 0.339833 0.789188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.0069 1.85101 1.68165 0.979151 10.4373

CAGE analysis