Hb_003687_250

Information

Type -
Description -
Location Contig3687: 184775-185581
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08220g
description hypothetical protein
nr
ID XP_012069828.1
description PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
swissprot
ID Q9SPK4
description Phosphoenolpyruvate carboxylase kinase 1 OS=Arabidopsis thaliana GN=PPCK1 PE=1 SV=1
trembl
ID A0A067KZE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02326 PE=4 SV=1
Gene Ontology
ID GO:0004672
description phosphoenolpyruvate carboxylase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37951: 185049-185426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_250 0.0 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
2 Hb_183086_050 0.169165548 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
3 Hb_006154_020 0.1911844572 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
4 Hb_015978_110 0.1950905059 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Jatropha curcas]
5 Hb_001369_700 0.2096673025 - - -
6 Hb_000172_380 0.2104339712 - - small heat-shock protein, putative [Ricinus communis]
7 Hb_113818_010 0.2107199554 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
8 Hb_000300_660 0.2156316825 - - unknown [Glycine max]
9 Hb_001195_070 0.2199803658 - - PREDICTED: protein RER1B-like [Jatropha curcas]
10 Hb_004109_160 0.2205945336 - - PREDICTED: peptide methionine sulfoxide reductase B1, chloroplastic [Jatropha curcas]
11 Hb_001405_140 0.2234337931 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
12 Hb_003884_040 0.2234424551 - - putative gag-pol polyprotein [Oryza sativa Japonica Group]
13 Hb_008699_030 0.2258253866 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
14 Hb_000114_150 0.2264134909 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
15 Hb_009767_130 0.2294356664 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
16 Hb_000521_090 0.2315704065 - - PREDICTED: RING-H2 finger protein ATL5 isoform X1 [Jatropha curcas]
17 Hb_000254_140 0.2329734788 - - PREDICTED: 30S ribosomal protein S17, chloroplastic [Jatropha curcas]
18 Hb_007632_170 0.2346956306 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
19 Hb_000062_400 0.2369497462 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002078_300 0.2371204807 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003687_250 Hb_003687_250 Hb_183086_050 Hb_183086_050 Hb_003687_250--Hb_183086_050 Hb_006154_020 Hb_006154_020 Hb_003687_250--Hb_006154_020 Hb_015978_110 Hb_015978_110 Hb_003687_250--Hb_015978_110 Hb_001369_700 Hb_001369_700 Hb_003687_250--Hb_001369_700 Hb_000172_380 Hb_000172_380 Hb_003687_250--Hb_000172_380 Hb_113818_010 Hb_113818_010 Hb_003687_250--Hb_113818_010 Hb_000300_660 Hb_000300_660 Hb_183086_050--Hb_000300_660 Hb_183086_050--Hb_006154_020 Hb_015934_120 Hb_015934_120 Hb_183086_050--Hb_015934_120 Hb_000613_070 Hb_000613_070 Hb_183086_050--Hb_000613_070 Hb_000186_050 Hb_000186_050 Hb_183086_050--Hb_000186_050 Hb_001124_100 Hb_001124_100 Hb_006154_020--Hb_001124_100 Hb_008699_030 Hb_008699_030 Hb_006154_020--Hb_008699_030 Hb_006154_020--Hb_113818_010 Hb_008053_050 Hb_008053_050 Hb_006154_020--Hb_008053_050 Hb_021495_020 Hb_021495_020 Hb_015978_110--Hb_021495_020 Hb_000656_330 Hb_000656_330 Hb_015978_110--Hb_000656_330 Hb_000381_010 Hb_000381_010 Hb_015978_110--Hb_000381_010 Hb_003030_030 Hb_003030_030 Hb_015978_110--Hb_003030_030 Hb_015978_110--Hb_113818_010 Hb_000417_170 Hb_000417_170 Hb_015978_110--Hb_000417_170 Hb_011053_020 Hb_011053_020 Hb_001369_700--Hb_011053_020 Hb_000473_060 Hb_000473_060 Hb_001369_700--Hb_000473_060 Hb_000023_210 Hb_000023_210 Hb_001369_700--Hb_000023_210 Hb_007002_010 Hb_007002_010 Hb_001369_700--Hb_007002_010 Hb_183963_010 Hb_183963_010 Hb_001369_700--Hb_183963_010 Hb_000012_010 Hb_000012_010 Hb_001369_700--Hb_000012_010 Hb_000059_270 Hb_000059_270 Hb_000172_380--Hb_000059_270 Hb_004735_020 Hb_004735_020 Hb_000172_380--Hb_004735_020 Hb_001080_070 Hb_001080_070 Hb_000172_380--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000172_380--Hb_000114_150 Hb_001220_050 Hb_001220_050 Hb_000172_380--Hb_001220_050 Hb_009020_040 Hb_009020_040 Hb_000172_380--Hb_009020_040 Hb_000189_480 Hb_000189_480 Hb_113818_010--Hb_000189_480 Hb_113818_010--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_113818_010--Hb_001504_030 Hb_002289_060 Hb_002289_060 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_009661_030 Hb_009661_030 Hb_113818_010--Hb_009661_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.406726 0.131469 0.0886285 0.728932 0.027201 0.172502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.266847 0.419648 0.189925 0.0636774 1.37007

CAGE analysis