Hb_012627_030

Information

Type -
Description -
Location Contig12627: 6475-10332
Sequence    

Annotation

kegg
ID rcu:RCOM_0353900
description hypothetical protein
nr
ID XP_012082038.1
description PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18293 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07957: 7303-7544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012627_030 0.0 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
2 Hb_007811_030 0.1184925925 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_000300_160 0.1225519673 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
4 Hb_004369_020 0.1276674302 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
5 Hb_000046_320 0.1283129949 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
6 Hb_111985_050 0.1283769266 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
7 Hb_068804_100 0.1285553195 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
8 Hb_002169_040 0.1286571062 - - unknown [Populus trichocarpa]
9 Hb_000777_040 0.1293175777 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
10 Hb_003416_010 0.1305302045 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
11 Hb_000054_090 0.1311910419 - - zinc finger protein, putative [Ricinus communis]
12 Hb_003057_090 0.1312052475 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
13 Hb_010361_010 0.1313889301 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
14 Hb_008096_010 0.1328514002 - - hypothetical protein MTR_1g045660 [Medicago truncatula]
15 Hb_005054_060 0.1331249993 - - PREDICTED: syntaxin-81 [Jatropha curcas]
16 Hb_001971_010 0.1349857009 - - F23N19.4 [Arabidopsis thaliana]
17 Hb_001234_080 0.135616643 - - PREDICTED: eyes absent homolog 2-like isoform X2 [Musa acuminata subsp. malaccensis]
18 Hb_000985_030 0.1358943637 - - PREDICTED: RRP15-like protein [Populus euphratica]
19 Hb_001635_180 0.1359427393 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
20 Hb_007389_010 0.1371329557 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]

Gene co-expression network

sample Hb_012627_030 Hb_012627_030 Hb_007811_030 Hb_007811_030 Hb_012627_030--Hb_007811_030 Hb_000300_160 Hb_000300_160 Hb_012627_030--Hb_000300_160 Hb_004369_020 Hb_004369_020 Hb_012627_030--Hb_004369_020 Hb_000046_320 Hb_000046_320 Hb_012627_030--Hb_000046_320 Hb_111985_050 Hb_111985_050 Hb_012627_030--Hb_111985_050 Hb_068804_100 Hb_068804_100 Hb_012627_030--Hb_068804_100 Hb_000915_260 Hb_000915_260 Hb_007811_030--Hb_000915_260 Hb_001971_010 Hb_001971_010 Hb_007811_030--Hb_001971_010 Hb_008096_010 Hb_008096_010 Hb_007811_030--Hb_008096_010 Hb_000054_090 Hb_000054_090 Hb_007811_030--Hb_000054_090 Hb_000173_290 Hb_000173_290 Hb_007811_030--Hb_000173_290 Hb_001348_180 Hb_001348_180 Hb_007811_030--Hb_001348_180 Hb_000521_050 Hb_000521_050 Hb_000300_160--Hb_000521_050 Hb_001635_180 Hb_001635_180 Hb_000300_160--Hb_001635_180 Hb_003417_020 Hb_003417_020 Hb_000300_160--Hb_003417_020 Hb_001633_050 Hb_001633_050 Hb_000300_160--Hb_001633_050 Hb_003126_050 Hb_003126_050 Hb_000300_160--Hb_003126_050 Hb_000777_040 Hb_000777_040 Hb_000300_160--Hb_000777_040 Hb_003728_080 Hb_003728_080 Hb_004369_020--Hb_003728_080 Hb_001450_050 Hb_001450_050 Hb_004369_020--Hb_001450_050 Hb_000010_090 Hb_000010_090 Hb_004369_020--Hb_000010_090 Hb_004369_020--Hb_000173_290 Hb_004182_040 Hb_004182_040 Hb_004369_020--Hb_004182_040 Hb_000010_330 Hb_000010_330 Hb_004369_020--Hb_000010_330 Hb_007904_260 Hb_007904_260 Hb_000046_320--Hb_007904_260 Hb_000985_030 Hb_000985_030 Hb_000046_320--Hb_000985_030 Hb_000046_320--Hb_000777_040 Hb_000749_220 Hb_000749_220 Hb_000046_320--Hb_000749_220 Hb_003177_030 Hb_003177_030 Hb_000046_320--Hb_003177_030 Hb_002998_060 Hb_002998_060 Hb_000046_320--Hb_002998_060 Hb_017904_010 Hb_017904_010 Hb_111985_050--Hb_017904_010 Hb_007389_010 Hb_007389_010 Hb_111985_050--Hb_007389_010 Hb_003020_020 Hb_003020_020 Hb_111985_050--Hb_003020_020 Hb_009694_010 Hb_009694_010 Hb_111985_050--Hb_009694_010 Hb_001959_070 Hb_001959_070 Hb_111985_050--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_111985_050--Hb_004837_030 Hb_001019_190 Hb_001019_190 Hb_068804_100--Hb_001019_190 Hb_068804_100--Hb_007811_030 Hb_002805_270 Hb_002805_270 Hb_068804_100--Hb_002805_270 Hb_068804_100--Hb_008096_010 Hb_000819_080 Hb_000819_080 Hb_068804_100--Hb_000819_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.848344 0.112435 0.601236 0.778017 1.02589 0.555272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.498077 1.25357 0.866048 0.535447 0.802199

CAGE analysis