Hb_000752_050

Information

Type -
Description -
Location Contig752: 136059-140010
Sequence    

Annotation

kegg
ID cit:102610887
description uncharacterized LOC102610887
nr
ID XP_006475543.1
description PREDICTED: uncharacterized protein LOC102610887 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID Q2QQD0
description Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os12g31470 PE=4 SV=2
Gene Ontology
ID GO:0003824
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000752_050 0.0 - - PREDICTED: uncharacterized protein LOC102610887 [Citrus sinensis]
2 Hb_005725_260 0.2672814416 - - squalene monooxygenase [Jatropha curcas]
3 Hb_006869_010 0.2675138378 - - unnamed protein product [Coffea canephora]
4 Hb_030131_010 0.2879056517 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
5 Hb_003435_010 0.2932528527 - - PREDICTED: ras-related protein RABC2a-like [Jatropha curcas]
6 Hb_000796_170 0.2988504097 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
7 Hb_004586_200 0.2992754219 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
8 Hb_001246_070 0.3008298754 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
9 Hb_001435_020 0.3040916681 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
10 Hb_001401_080 0.3042278986 - - PREDICTED: protein TIC 22, chloroplastic [Jatropha curcas]
11 Hb_005000_130 0.3079754241 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
12 Hb_183086_050 0.3080368001 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
13 Hb_005565_060 0.3143123607 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50 isoform X1 [Jatropha curcas]
14 Hb_006452_230 0.3198264154 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
15 Hb_003687_250 0.3217573075 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
16 Hb_001343_010 0.323369482 - - -
17 Hb_000172_380 0.3323365532 - - small heat-shock protein, putative [Ricinus communis]
18 Hb_004117_350 0.3334429065 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
19 Hb_000300_660 0.3361238622 - - unknown [Glycine max]
20 Hb_000294_050 0.3364033288 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]

Gene co-expression network

sample Hb_000752_050 Hb_000752_050 Hb_005725_260 Hb_005725_260 Hb_000752_050--Hb_005725_260 Hb_006869_010 Hb_006869_010 Hb_000752_050--Hb_006869_010 Hb_030131_010 Hb_030131_010 Hb_000752_050--Hb_030131_010 Hb_003435_010 Hb_003435_010 Hb_000752_050--Hb_003435_010 Hb_000796_170 Hb_000796_170 Hb_000752_050--Hb_000796_170 Hb_004586_200 Hb_004586_200 Hb_000752_050--Hb_004586_200 Hb_001401_080 Hb_001401_080 Hb_005725_260--Hb_001401_080 Hb_000441_060 Hb_000441_060 Hb_005725_260--Hb_000441_060 Hb_000172_380 Hb_000172_380 Hb_005725_260--Hb_000172_380 Hb_005725_260--Hb_000796_170 Hb_000028_110 Hb_000028_110 Hb_005725_260--Hb_000028_110 Hb_001435_020 Hb_001435_020 Hb_005725_260--Hb_001435_020 Hb_002027_150 Hb_002027_150 Hb_006869_010--Hb_002027_150 Hb_006869_010--Hb_001401_080 Hb_006269_050 Hb_006269_050 Hb_006869_010--Hb_006269_050 Hb_005565_060 Hb_005565_060 Hb_006869_010--Hb_005565_060 Hb_000982_110 Hb_000982_110 Hb_006869_010--Hb_000982_110 Hb_006452_230 Hb_006452_230 Hb_030131_010--Hb_006452_230 Hb_000331_520 Hb_000331_520 Hb_030131_010--Hb_000331_520 Hb_000175_260 Hb_000175_260 Hb_030131_010--Hb_000175_260 Hb_009710_030 Hb_009710_030 Hb_030131_010--Hb_009710_030 Hb_000254_140 Hb_000254_140 Hb_030131_010--Hb_000254_140 Hb_000258_140 Hb_000258_140 Hb_030131_010--Hb_000258_140 Hb_000009_660 Hb_000009_660 Hb_003435_010--Hb_000009_660 Hb_000116_360 Hb_000116_360 Hb_003435_010--Hb_000116_360 Hb_000120_290 Hb_000120_290 Hb_003435_010--Hb_000120_290 Hb_002447_080 Hb_002447_080 Hb_003435_010--Hb_002447_080 Hb_183086_050 Hb_183086_050 Hb_003435_010--Hb_183086_050 Hb_001976_040 Hb_001976_040 Hb_003435_010--Hb_001976_040 Hb_005000_130 Hb_005000_130 Hb_000796_170--Hb_005000_130 Hb_000371_100 Hb_000371_100 Hb_000796_170--Hb_000371_100 Hb_000796_170--Hb_000172_380 Hb_000796_170--Hb_001435_020 Hb_007722_010 Hb_007722_010 Hb_000796_170--Hb_007722_010 Hb_000135_030 Hb_000135_030 Hb_000796_170--Hb_000135_030 Hb_002284_270 Hb_002284_270 Hb_004586_200--Hb_002284_270 Hb_004586_200--Hb_001435_020 Hb_004586_200--Hb_005725_260 Hb_001790_030 Hb_001790_030 Hb_004586_200--Hb_001790_030 Hb_000788_020 Hb_000788_020 Hb_004586_200--Hb_000788_020 Hb_011386_030 Hb_011386_030 Hb_004586_200--Hb_011386_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0192873 0 0 0.0191769 0.00643482 0.00561586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0291581 0.0114726 0 0.00910092 0.0489516

CAGE analysis