Hb_002284_270

Information

Type transcription factor
Description TF Family: HB
Location Contig2284: 215510-216282
Sequence    

Annotation

kegg
ID rcu:RCOM_1601580
description DNA binding protein, putative
nr
ID XP_002510692.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q5QMM3
description WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1
trembl
ID B9R8P9
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1601580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_270 0.0 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
2 Hb_011310_180 0.1895377508 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
3 Hb_001842_020 0.2168634377 - - PREDICTED: low molecular weight phosphotyrosine protein phosphatase [Jatropha curcas]
4 Hb_004545_010 0.2188953271 - - acyl carrier protein [Ricinus communis]
5 Hb_003935_070 0.2207640781 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_000032_140 0.2215414207 - - conserved hypothetical protein [Ricinus communis]
7 Hb_126917_010 0.2268309567 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
8 Hb_000107_350 0.228367009 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
9 Hb_000395_010 0.2296512427 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
10 Hb_000805_010 0.2301900561 - - PREDICTED: uncharacterized protein LOC105629931 [Jatropha curcas]
11 Hb_000291_290 0.2326725067 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002701_090 0.2328842536 - - hypothetical protein POPTR_0017s13430g [Populus trichocarpa]
13 Hb_000018_140 0.2337904967 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
14 Hb_000866_180 0.2357873171 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Populus euphratica]
15 Hb_000649_040 0.235799476 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
16 Hb_000834_080 0.2368045958 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
17 Hb_001269_070 0.2368359837 - - double-stranded RNA binding protein, putative [Ricinus communis]
18 Hb_004586_200 0.2378856305 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
19 Hb_158092_100 0.237923826 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
20 Hb_015141_010 0.2380191437 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_002284_270 Hb_002284_270 Hb_011310_180 Hb_011310_180 Hb_002284_270--Hb_011310_180 Hb_001842_020 Hb_001842_020 Hb_002284_270--Hb_001842_020 Hb_004545_010 Hb_004545_010 Hb_002284_270--Hb_004545_010 Hb_003935_070 Hb_003935_070 Hb_002284_270--Hb_003935_070 Hb_000032_140 Hb_000032_140 Hb_002284_270--Hb_000032_140 Hb_126917_010 Hb_126917_010 Hb_002284_270--Hb_126917_010 Hb_003462_080 Hb_003462_080 Hb_011310_180--Hb_003462_080 Hb_011310_180--Hb_001842_020 Hb_000086_390 Hb_000086_390 Hb_011310_180--Hb_000086_390 Hb_002780_030 Hb_002780_030 Hb_011310_180--Hb_002780_030 Hb_010672_030 Hb_010672_030 Hb_011310_180--Hb_010672_030 Hb_000291_290 Hb_000291_290 Hb_011310_180--Hb_000291_290 Hb_016219_030 Hb_016219_030 Hb_001842_020--Hb_016219_030 Hb_000560_040 Hb_000560_040 Hb_001842_020--Hb_000560_040 Hb_007904_040 Hb_007904_040 Hb_001842_020--Hb_007904_040 Hb_002759_120 Hb_002759_120 Hb_001842_020--Hb_002759_120 Hb_002053_010 Hb_002053_010 Hb_001842_020--Hb_002053_010 Hb_000388_060 Hb_000388_060 Hb_001842_020--Hb_000388_060 Hb_001405_090 Hb_001405_090 Hb_004545_010--Hb_001405_090 Hb_004545_010--Hb_000032_140 Hb_000206_170 Hb_000206_170 Hb_004545_010--Hb_000206_170 Hb_006620_070 Hb_006620_070 Hb_004545_010--Hb_006620_070 Hb_000042_290 Hb_000042_290 Hb_004545_010--Hb_000042_290 Hb_019613_010 Hb_019613_010 Hb_004545_010--Hb_019613_010 Hb_000805_010 Hb_000805_010 Hb_003935_070--Hb_000805_010 Hb_000649_040 Hb_000649_040 Hb_003935_070--Hb_000649_040 Hb_000108_150 Hb_000108_150 Hb_003935_070--Hb_000108_150 Hb_015141_010 Hb_015141_010 Hb_003935_070--Hb_015141_010 Hb_000749_020 Hb_000749_020 Hb_003935_070--Hb_000749_020 Hb_002759_220 Hb_002759_220 Hb_003935_070--Hb_002759_220 Hb_000032_140--Hb_007904_040 Hb_000032_140--Hb_000042_290 Hb_000175_050 Hb_000175_050 Hb_000032_140--Hb_000175_050 Hb_000991_020 Hb_000991_020 Hb_000032_140--Hb_000991_020 Hb_000032_140--Hb_001842_020 Hb_001124_180 Hb_001124_180 Hb_000032_140--Hb_001124_180 Hb_000834_080 Hb_000834_080 Hb_126917_010--Hb_000834_080 Hb_009687_020 Hb_009687_020 Hb_126917_010--Hb_009687_020 Hb_000300_020 Hb_000300_020 Hb_126917_010--Hb_000300_020 Hb_003171_030 Hb_003171_030 Hb_126917_010--Hb_003171_030 Hb_011053_030 Hb_011053_030 Hb_126917_010--Hb_011053_030 Hb_001269_500 Hb_001269_500 Hb_126917_010--Hb_001269_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.052181 0.044572 0.242616 0.447151 0.052581 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.2436 0.0956994 0 0.118733 0.724766

CAGE analysis