Hb_004545_010

Information

Type -
Description -
Location Contig4545: 17099-19578
Sequence    

Annotation

kegg
ID rcu:RCOM_1429400
description acyl carrier protein (EC:1.3.1.74)
nr
ID XP_002512285.1
description acyl carrier protein [Ricinus communis]
swissprot
ID P93092
description Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1
trembl
ID B9REW6
description Acyl carrier protein OS=Ricinus communis GN=RCOM_1429400 PE=3 SV=1
Gene Ontology
ID GO:0009536
description acyl carrier protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43370: 17106-19645
cDNA
(Sanger)
(ID:Location)		 042_O21.ab1: 17170-19518

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004545_010 0.0 - - acyl carrier protein [Ricinus communis]
2 Hb_001405_090 0.1521718802 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
3 Hb_000032_140 0.1733916718 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000206_170 0.175685805 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
5 Hb_006620_070 0.1873712145 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
6 Hb_000042_290 0.1929954478 - - PREDICTED: uncharacterized protein LOC105632818 isoform X2 [Jatropha curcas]
7 Hb_019613_010 0.1982102659 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_004689_040 0.1995291633 - - PREDICTED: uncharacterized protein LOC105648084 [Jatropha curcas]
9 Hb_000442_070 0.1998154451 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
10 Hb_001294_030 0.202813044 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
11 Hb_000395_010 0.2064116503 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
12 Hb_002304_180 0.2086858244 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
13 Hb_002477_020 0.2094932396 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
14 Hb_001133_100 0.2105656556 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
15 Hb_002150_130 0.2105901973 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
16 Hb_002272_220 0.2140571918 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002324_090 0.2151859576 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_009296_030 0.2160393871 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
19 Hb_114861_010 0.2161203473 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
20 Hb_002968_050 0.2172348641 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004545_010 Hb_004545_010 Hb_001405_090 Hb_001405_090 Hb_004545_010--Hb_001405_090 Hb_000032_140 Hb_000032_140 Hb_004545_010--Hb_000032_140 Hb_000206_170 Hb_000206_170 Hb_004545_010--Hb_000206_170 Hb_006620_070 Hb_006620_070 Hb_004545_010--Hb_006620_070 Hb_000042_290 Hb_000042_290 Hb_004545_010--Hb_000042_290 Hb_019613_010 Hb_019613_010 Hb_004545_010--Hb_019613_010 Hb_001405_090--Hb_006620_070 Hb_004459_060 Hb_004459_060 Hb_001405_090--Hb_004459_060 Hb_000442_070 Hb_000442_070 Hb_001405_090--Hb_000442_070 Hb_007694_060 Hb_007694_060 Hb_001405_090--Hb_007694_060 Hb_011114_020 Hb_011114_020 Hb_001405_090--Hb_011114_020 Hb_001405_090--Hb_000206_170 Hb_007904_040 Hb_007904_040 Hb_000032_140--Hb_007904_040 Hb_000032_140--Hb_000042_290 Hb_000175_050 Hb_000175_050 Hb_000032_140--Hb_000175_050 Hb_000991_020 Hb_000991_020 Hb_000032_140--Hb_000991_020 Hb_001842_020 Hb_001842_020 Hb_000032_140--Hb_001842_020 Hb_001124_180 Hb_001124_180 Hb_000032_140--Hb_001124_180 Hb_002411_100 Hb_002411_100 Hb_000206_170--Hb_002411_100 Hb_011519_050 Hb_011519_050 Hb_000206_170--Hb_011519_050 Hb_000206_170--Hb_004459_060 Hb_000206_170--Hb_006620_070 Hb_002272_220 Hb_002272_220 Hb_000206_170--Hb_002272_220 Hb_006620_070--Hb_004459_060 Hb_006620_070--Hb_007694_060 Hb_000005_130 Hb_000005_130 Hb_006620_070--Hb_000005_130 Hb_006620_070--Hb_002411_100 Hb_006620_070--Hb_000442_070 Hb_000042_290--Hb_001124_180 Hb_002150_130 Hb_002150_130 Hb_000042_290--Hb_002150_130 Hb_005489_090 Hb_005489_090 Hb_000042_290--Hb_005489_090 Hb_000152_480 Hb_000152_480 Hb_000042_290--Hb_000152_480 Hb_003935_080 Hb_003935_080 Hb_000042_290--Hb_003935_080 Hb_000176_010 Hb_000176_010 Hb_000042_290--Hb_000176_010 Hb_001269_070 Hb_001269_070 Hb_019613_010--Hb_001269_070 Hb_000329_580 Hb_000329_580 Hb_019613_010--Hb_000329_580 Hb_011053_020 Hb_011053_020 Hb_019613_010--Hb_011053_020 Hb_001294_030 Hb_001294_030 Hb_019613_010--Hb_001294_030 Hb_000473_060 Hb_000473_060 Hb_019613_010--Hb_000473_060 Hb_031330_020 Hb_031330_020 Hb_019613_010--Hb_031330_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.73315 1.24565 41.343 35.723 1.03654 1.08683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.053 20.3393 1.67531 2.12848 95.2243

CAGE analysis