Hb_006452_230

Information

Type -
Description -
Location Contig6452: 245432-245794
Sequence    

Annotation

kegg
ID tcc:TCM_027325
description hypothetical protein
nr
ID XP_012073426.1
description PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061G8R4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_027325 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006452_230 0.0 - - PREDICTED: uncharacterized protein LOC105635044 [Jatropha curcas]
2 Hb_007157_010 0.192326976 - - -
3 Hb_030131_010 0.2024110929 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal, partial [Jatropha curcas]
4 Hb_000331_520 0.2387323049 - - Esterase precursor, putative [Ricinus communis]
5 Hb_000402_100 0.2569728993 - - PREDICTED: L-tryptophan--pyruvate aminotransferase 1 [Jatropha curcas]
6 Hb_172665_010 0.2653454331 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_001366_070 0.2812174625 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
8 Hb_000434_020 0.2947823778 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
9 Hb_000116_360 0.2963332564 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
10 Hb_000175_190 0.2976986971 - - PREDICTED: phosphatidylcholine:diacylglycerol cholinephosphotransferase 1-like [Jatropha curcas]
11 Hb_097218_020 0.2996725053 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
12 Hb_004897_010 0.3023354914 - - -
13 Hb_000156_210 0.3026387027 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
14 Hb_000003_360 0.3040077381 - - Putative inactive purple acid phosphatase 27 [Glycine soja]
15 Hb_000191_080 0.3056670775 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
16 Hb_000258_140 0.3065257974 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011724_030 0.3070725302 - - Organic cation transporter, putative [Ricinus communis]
18 Hb_005054_240 0.3089642862 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003435_010 0.3095430097 - - PREDICTED: ras-related protein RABC2a-like [Jatropha curcas]
20 Hb_007632_170 0.3117533103 - - hypothetical protein JCGZ_01028 [Jatropha curcas]

Gene co-expression network

sample Hb_006452_230 Hb_006452_230 Hb_007157_010 Hb_007157_010 Hb_006452_230--Hb_007157_010 Hb_030131_010 Hb_030131_010 Hb_006452_230--Hb_030131_010 Hb_000331_520 Hb_000331_520 Hb_006452_230--Hb_000331_520 Hb_000402_100 Hb_000402_100 Hb_006452_230--Hb_000402_100 Hb_172665_010 Hb_172665_010 Hb_006452_230--Hb_172665_010 Hb_001366_070 Hb_001366_070 Hb_006452_230--Hb_001366_070 Hb_007157_010--Hb_172665_010 Hb_001519_020 Hb_001519_020 Hb_007157_010--Hb_001519_020 Hb_007157_010--Hb_000331_520 Hb_000837_010 Hb_000837_010 Hb_007157_010--Hb_000837_010 Hb_104721_010 Hb_104721_010 Hb_007157_010--Hb_104721_010 Hb_030131_010--Hb_000331_520 Hb_000175_260 Hb_000175_260 Hb_030131_010--Hb_000175_260 Hb_009710_030 Hb_009710_030 Hb_030131_010--Hb_009710_030 Hb_000254_140 Hb_000254_140 Hb_030131_010--Hb_000254_140 Hb_000258_140 Hb_000258_140 Hb_030131_010--Hb_000258_140 Hb_000331_520--Hb_172665_010 Hb_161207_010 Hb_161207_010 Hb_000331_520--Hb_161207_010 Hb_011724_030 Hb_011724_030 Hb_000331_520--Hb_011724_030 Hb_001204_020 Hb_001204_020 Hb_000402_100--Hb_001204_020 Hb_001411_040 Hb_001411_040 Hb_000402_100--Hb_001411_040 Hb_000003_360 Hb_000003_360 Hb_000402_100--Hb_000003_360 Hb_000175_190 Hb_000175_190 Hb_000402_100--Hb_000175_190 Hb_002759_110 Hb_002759_110 Hb_000402_100--Hb_002759_110 Hb_172665_010--Hb_000837_010 Hb_172665_010--Hb_001519_020 Hb_052764_100 Hb_052764_100 Hb_172665_010--Hb_052764_100 Hb_003849_270 Hb_003849_270 Hb_001366_070--Hb_003849_270 Hb_001493_120 Hb_001493_120 Hb_001366_070--Hb_001493_120 Hb_004136_030 Hb_004136_030 Hb_001366_070--Hb_004136_030 Hb_002042_080 Hb_002042_080 Hb_001366_070--Hb_002042_080 Hb_000828_050 Hb_000828_050 Hb_001366_070--Hb_000828_050 Hb_001059_120 Hb_001059_120 Hb_001366_070--Hb_001059_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.674843 0.219985 0.256361 2.3926 0.103143 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.08131 5.13318 0 1.75052 5.80126

CAGE analysis