Hb_000837_010

Information

Type -
Description -
Location Contig837: 10631-19239
Sequence    

Annotation

kegg
ID bvg:104894399
description uncharacterized LOC104894399
nr
ID XP_010678922.1
description PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A0D3A328
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000837_010 0.0 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
2 Hb_006938_050 0.2335974495 - - PREDICTED: uncharacterized protein LOC105648204 [Jatropha curcas]
3 Hb_001558_050 0.2372404098 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
4 Hb_052764_100 0.2431657943 - - PREDICTED: beta-galactosidase 8-like [Jatropha curcas]
5 Hb_172665_010 0.252236792 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_004218_260 0.2601613254 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
7 Hb_000460_070 0.2790582971 - - luminal binding protein [Gossypium hirsutum]
8 Hb_178063_010 0.2865001767 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
9 Hb_003005_040 0.2890525491 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_001229_020 0.2939868226 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
11 Hb_007157_010 0.2962833426 - - -
12 Hb_033152_040 0.2983315022 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
13 Hb_001621_060 0.2985545486 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
14 Hb_042202_050 0.2990316134 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
15 Hb_008698_010 0.3002089258 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_001519_020 0.3008541052 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
17 Hb_001493_120 0.3026456876 - - -
18 Hb_010977_010 0.3035678915 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000473_060 0.305922262 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]
20 Hb_054467_010 0.3100995066 - - -

Gene co-expression network

sample Hb_000837_010 Hb_000837_010 Hb_006938_050 Hb_006938_050 Hb_000837_010--Hb_006938_050 Hb_001558_050 Hb_001558_050 Hb_000837_010--Hb_001558_050 Hb_052764_100 Hb_052764_100 Hb_000837_010--Hb_052764_100 Hb_172665_010 Hb_172665_010 Hb_000837_010--Hb_172665_010 Hb_004218_260 Hb_004218_260 Hb_000837_010--Hb_004218_260 Hb_000460_070 Hb_000460_070 Hb_000837_010--Hb_000460_070 Hb_132840_070 Hb_132840_070 Hb_006938_050--Hb_132840_070 Hb_002743_040 Hb_002743_040 Hb_006938_050--Hb_002743_040 Hb_000705_270 Hb_000705_270 Hb_006938_050--Hb_000705_270 Hb_000035_020 Hb_000035_020 Hb_006938_050--Hb_000035_020 Hb_069696_010 Hb_069696_010 Hb_006938_050--Hb_069696_010 Hb_076223_010 Hb_076223_010 Hb_001558_050--Hb_076223_010 Hb_000116_360 Hb_000116_360 Hb_001558_050--Hb_000116_360 Hb_042202_050 Hb_042202_050 Hb_001558_050--Hb_042202_050 Hb_178063_010 Hb_178063_010 Hb_001558_050--Hb_178063_010 Hb_000077_200 Hb_000077_200 Hb_001558_050--Hb_000077_200 Hb_052764_100--Hb_004218_260 Hb_010815_020 Hb_010815_020 Hb_052764_100--Hb_010815_020 Hb_000203_140 Hb_000203_140 Hb_052764_100--Hb_000203_140 Hb_002360_030 Hb_002360_030 Hb_052764_100--Hb_002360_030 Hb_007054_050 Hb_007054_050 Hb_052764_100--Hb_007054_050 Hb_000331_520 Hb_000331_520 Hb_172665_010--Hb_000331_520 Hb_007157_010 Hb_007157_010 Hb_172665_010--Hb_007157_010 Hb_001519_020 Hb_001519_020 Hb_172665_010--Hb_001519_020 Hb_172665_010--Hb_052764_100 Hb_006452_230 Hb_006452_230 Hb_172665_010--Hb_006452_230 Hb_000683_080 Hb_000683_080 Hb_004218_260--Hb_000683_080 Hb_004218_260--Hb_000460_070 Hb_004218_260--Hb_007054_050 Hb_000184_030 Hb_000184_030 Hb_004218_260--Hb_000184_030 Hb_000014_190 Hb_000014_190 Hb_004218_260--Hb_000014_190 Hb_008698_010 Hb_008698_010 Hb_000460_070--Hb_008698_010 Hb_001229_020 Hb_001229_020 Hb_000460_070--Hb_001229_020 Hb_000460_070--Hb_000683_080 Hb_001621_060 Hb_001621_060 Hb_000460_070--Hb_001621_060 Hb_000189_520 Hb_000189_520 Hb_000460_070--Hb_000189_520 Hb_000460_070--Hb_007054_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00984737 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0161435 0.0190574 0.0122373 0.00754024 0.054632

CAGE analysis