Hb_076223_010

Information

Type -
Description -
Location Contig76223: 951-2084
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076223_010 0.0 - - -
2 Hb_001558_050 0.2090067299 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
3 Hb_003777_040 0.2244417162 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
4 Hb_002042_080 0.2299335664 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
5 Hb_000975_230 0.2375663765 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
6 Hb_025645_030 0.2398954287 - - -
7 Hb_000178_120 0.2436413503 - - PREDICTED: histone H2B [Jatropha curcas]
8 Hb_002243_060 0.2484628171 - - hypothetical protein POPTR_0022s00750g [Populus trichocarpa]
9 Hb_000260_790 0.2495964462 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
10 Hb_000049_050 0.251955692 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
11 Hb_004162_180 0.2521786652 - - zinc finger protein, putative [Ricinus communis]
12 Hb_023344_050 0.2540377089 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
13 Hb_001766_030 0.2543619954 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
14 Hb_000879_210 0.2553350382 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
15 Hb_001195_490 0.2559254843 - - hypothetical protein glysoja_018593 [Glycine soja]
16 Hb_007254_080 0.2566479412 - - -
17 Hb_077399_010 0.2638593947 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
18 Hb_116420_020 0.2658643086 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
19 Hb_010402_050 0.2696405357 - - -
20 Hb_000445_490 0.2710297503 - - -

Gene co-expression network

sample Hb_076223_010 Hb_076223_010 Hb_001558_050 Hb_001558_050 Hb_076223_010--Hb_001558_050 Hb_003777_040 Hb_003777_040 Hb_076223_010--Hb_003777_040 Hb_002042_080 Hb_002042_080 Hb_076223_010--Hb_002042_080 Hb_000975_230 Hb_000975_230 Hb_076223_010--Hb_000975_230 Hb_025645_030 Hb_025645_030 Hb_076223_010--Hb_025645_030 Hb_000178_120 Hb_000178_120 Hb_076223_010--Hb_000178_120 Hb_000837_010 Hb_000837_010 Hb_001558_050--Hb_000837_010 Hb_000116_360 Hb_000116_360 Hb_001558_050--Hb_000116_360 Hb_042202_050 Hb_042202_050 Hb_001558_050--Hb_042202_050 Hb_178063_010 Hb_178063_010 Hb_001558_050--Hb_178063_010 Hb_000077_200 Hb_000077_200 Hb_001558_050--Hb_000077_200 Hb_003777_040--Hb_000975_230 Hb_000445_490 Hb_000445_490 Hb_003777_040--Hb_000445_490 Hb_011377_020 Hb_011377_020 Hb_003777_040--Hb_011377_020 Hb_103118_020 Hb_103118_020 Hb_003777_040--Hb_103118_020 Hb_002809_150 Hb_002809_150 Hb_003777_040--Hb_002809_150 Hb_001307_210 Hb_001307_210 Hb_003777_040--Hb_001307_210 Hb_001059_120 Hb_001059_120 Hb_002042_080--Hb_001059_120 Hb_002042_080--Hb_000178_120 Hb_147752_010 Hb_147752_010 Hb_002042_080--Hb_147752_010 Hb_002243_060 Hb_002243_060 Hb_002042_080--Hb_002243_060 Hb_007441_260 Hb_007441_260 Hb_002042_080--Hb_007441_260 Hb_001240_020 Hb_001240_020 Hb_002042_080--Hb_001240_020 Hb_000975_230--Hb_000445_490 Hb_000049_050 Hb_000049_050 Hb_000975_230--Hb_000049_050 Hb_000030_200 Hb_000030_200 Hb_000975_230--Hb_000030_200 Hb_000260_790 Hb_000260_790 Hb_000975_230--Hb_000260_790 Hb_000834_030 Hb_000834_030 Hb_000975_230--Hb_000834_030 Hb_023344_050 Hb_023344_050 Hb_025645_030--Hb_023344_050 Hb_004162_180 Hb_004162_180 Hb_025645_030--Hb_004162_180 Hb_001225_010 Hb_001225_010 Hb_025645_030--Hb_001225_010 Hb_000110_170 Hb_000110_170 Hb_025645_030--Hb_000110_170 Hb_001172_100 Hb_001172_100 Hb_025645_030--Hb_001172_100 Hb_006420_030 Hb_006420_030 Hb_025645_030--Hb_006420_030 Hb_000178_120--Hb_023344_050 Hb_000178_120--Hb_007441_260 Hb_002774_050 Hb_002774_050 Hb_000178_120--Hb_002774_050 Hb_010402_050 Hb_010402_050 Hb_000178_120--Hb_010402_050 Hb_000178_120--Hb_002243_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0881857 0 0 0.343668 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.41862 0.822074 0.261023 0.141628 0.286443

CAGE analysis