Hb_001558_050

Information

Type -
Description -
Location Contig1558: 34739-35476
Sequence    

Annotation

kegg
ID rcu:RCOM_0069820
description hypothetical protein
nr
ID XP_012081731.1
description PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0N2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18691 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001558_050 0.0 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
2 Hb_076223_010 0.2090067299 - - -
3 Hb_000837_010 0.2372404098 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
4 Hb_000116_360 0.2458502954 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
5 Hb_042202_050 0.2461005681 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
6 Hb_178063_010 0.2646853189 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
7 Hb_000077_200 0.2650841618 - - PREDICTED: thioredoxin [Jatropha curcas]
8 Hb_001284_010 0.2734164005 - - hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
9 Hb_000679_220 0.2805219748 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
10 Hb_000530_120 0.2815206807 - - copper transport protein ATOX1 [Hevea brasiliensis]
11 Hb_006938_050 0.2818353567 - - PREDICTED: uncharacterized protein LOC105648204 [Jatropha curcas]
12 Hb_002007_340 0.2822413413 - - cyclin-dependent protein kinase, putative [Ricinus communis]
13 Hb_000365_370 0.2826529561 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007741_100 0.2859187588 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
15 Hb_002743_040 0.286938853 - - PREDICTED: uncharacterized protein LOC105785507 isoform X2 [Gossypium raimondii]
16 Hb_019762_050 0.2877543884 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
17 Hb_007943_190 0.2877775716 - - cytoplasmic dynein light chain, putative [Ricinus communis]
18 Hb_000156_210 0.2885125902 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
19 Hb_000705_290 0.290736158 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
20 Hb_002320_080 0.2936772215 - - PREDICTED: MLO-like protein 13 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001558_050 Hb_001558_050 Hb_076223_010 Hb_076223_010 Hb_001558_050--Hb_076223_010 Hb_000837_010 Hb_000837_010 Hb_001558_050--Hb_000837_010 Hb_000116_360 Hb_000116_360 Hb_001558_050--Hb_000116_360 Hb_042202_050 Hb_042202_050 Hb_001558_050--Hb_042202_050 Hb_178063_010 Hb_178063_010 Hb_001558_050--Hb_178063_010 Hb_000077_200 Hb_000077_200 Hb_001558_050--Hb_000077_200 Hb_003777_040 Hb_003777_040 Hb_076223_010--Hb_003777_040 Hb_002042_080 Hb_002042_080 Hb_076223_010--Hb_002042_080 Hb_000975_230 Hb_000975_230 Hb_076223_010--Hb_000975_230 Hb_025645_030 Hb_025645_030 Hb_076223_010--Hb_025645_030 Hb_000178_120 Hb_000178_120 Hb_076223_010--Hb_000178_120 Hb_006938_050 Hb_006938_050 Hb_000837_010--Hb_006938_050 Hb_052764_100 Hb_052764_100 Hb_000837_010--Hb_052764_100 Hb_172665_010 Hb_172665_010 Hb_000837_010--Hb_172665_010 Hb_004218_260 Hb_004218_260 Hb_000837_010--Hb_004218_260 Hb_000460_070 Hb_000460_070 Hb_000837_010--Hb_000460_070 Hb_010422_070 Hb_010422_070 Hb_000116_360--Hb_010422_070 Hb_000208_180 Hb_000208_180 Hb_000116_360--Hb_000208_180 Hb_000457_290 Hb_000457_290 Hb_000116_360--Hb_000457_290 Hb_004317_030 Hb_004317_030 Hb_000116_360--Hb_004317_030 Hb_000056_070 Hb_000056_070 Hb_000116_360--Hb_000056_070 Hb_000260_620 Hb_000260_620 Hb_000116_360--Hb_000260_620 Hb_001284_010 Hb_001284_010 Hb_042202_050--Hb_001284_010 Hb_000052_020 Hb_000052_020 Hb_042202_050--Hb_000052_020 Hb_000156_210 Hb_000156_210 Hb_042202_050--Hb_000156_210 Hb_006738_020 Hb_006738_020 Hb_042202_050--Hb_006738_020 Hb_000997_360 Hb_000997_360 Hb_042202_050--Hb_000997_360 Hb_146680_010 Hb_146680_010 Hb_042202_050--Hb_146680_010 Hb_000679_220 Hb_000679_220 Hb_178063_010--Hb_000679_220 Hb_178063_010--Hb_000837_010 Hb_000310_070 Hb_000310_070 Hb_178063_010--Hb_000310_070 Hb_002743_040 Hb_002743_040 Hb_178063_010--Hb_002743_040 Hb_000389_050 Hb_000389_050 Hb_178063_010--Hb_000389_050 Hb_000016_170 Hb_000016_170 Hb_000077_200--Hb_000016_170 Hb_002320_080 Hb_002320_080 Hb_000077_200--Hb_002320_080 Hb_000946_100 Hb_000946_100 Hb_000077_200--Hb_000946_100 Hb_005167_030 Hb_005167_030 Hb_000077_200--Hb_005167_030 Hb_002154_110 Hb_002154_110 Hb_000077_200--Hb_002154_110 Hb_022593_010 Hb_022593_010 Hb_000077_200--Hb_022593_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.130494 0 0 0.434884 0.0327785 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.376108 0.650536 0.424542 0.144056 0.823899

CAGE analysis