Hb_004218_260

Information

Type -
Description -
Location Contig4218: 256027-266610
Sequence    

Annotation

kegg
ID rcu:RCOM_1452480
description Auxin-induced protein 5NG4, putative
nr
ID XP_002513057.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID Q9FL41
description WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1
trembl
ID B9RGA5
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_1452480 PE=4 SV=1
Gene Ontology
ID GO:0016020
description wat1-related protein at5g07050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004218_260 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_052764_100 0.1643337989 - - PREDICTED: beta-galactosidase 8-like [Jatropha curcas]
3 Hb_000683_080 0.1930066003 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
4 Hb_000460_070 0.1985919162 - - luminal binding protein [Gossypium hirsutum]
5 Hb_007054_050 0.213407544 - - -
6 Hb_000184_030 0.2353625594 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
7 Hb_000014_190 0.2357716319 - - Phytoene dehydrogenase, putative [Ricinus communis]
8 Hb_000890_110 0.2379898035 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
9 Hb_000189_520 0.2454996634 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
10 Hb_009620_060 0.2463655141 - - PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Jatropha curcas]
11 Hb_006538_180 0.2477002961 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
12 Hb_008698_010 0.2507959435 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_000012_160 0.2513196133 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
14 Hb_002360_030 0.25144962 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
15 Hb_000035_020 0.2518030074 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
16 Hb_001621_060 0.2535913432 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
17 Hb_000837_010 0.2601613254 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
18 Hb_003226_190 0.2612851302 - - PREDICTED: blue-light photoreceptor PHR2 [Jatropha curcas]
19 Hb_006856_030 0.2626607351 - - Uridine kinase-like protein 4 [Glycine soja]
20 Hb_001792_030 0.2630536977 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004218_260 Hb_004218_260 Hb_052764_100 Hb_052764_100 Hb_004218_260--Hb_052764_100 Hb_000683_080 Hb_000683_080 Hb_004218_260--Hb_000683_080 Hb_000460_070 Hb_000460_070 Hb_004218_260--Hb_000460_070 Hb_007054_050 Hb_007054_050 Hb_004218_260--Hb_007054_050 Hb_000184_030 Hb_000184_030 Hb_004218_260--Hb_000184_030 Hb_000014_190 Hb_000014_190 Hb_004218_260--Hb_000014_190 Hb_010815_020 Hb_010815_020 Hb_052764_100--Hb_010815_020 Hb_000203_140 Hb_000203_140 Hb_052764_100--Hb_000203_140 Hb_002360_030 Hb_002360_030 Hb_052764_100--Hb_002360_030 Hb_000837_010 Hb_000837_010 Hb_052764_100--Hb_000837_010 Hb_052764_100--Hb_007054_050 Hb_007002_010 Hb_007002_010 Hb_000683_080--Hb_007002_010 Hb_000495_080 Hb_000495_080 Hb_000683_080--Hb_000495_080 Hb_000352_220 Hb_000352_220 Hb_000683_080--Hb_000352_220 Hb_000890_110 Hb_000890_110 Hb_000683_080--Hb_000890_110 Hb_003226_190 Hb_003226_190 Hb_000683_080--Hb_003226_190 Hb_000189_520 Hb_000189_520 Hb_000683_080--Hb_000189_520 Hb_008698_010 Hb_008698_010 Hb_000460_070--Hb_008698_010 Hb_001229_020 Hb_001229_020 Hb_000460_070--Hb_001229_020 Hb_000460_070--Hb_000683_080 Hb_001621_060 Hb_001621_060 Hb_000460_070--Hb_001621_060 Hb_000460_070--Hb_000189_520 Hb_000460_070--Hb_007054_050 Hb_007054_050--Hb_002360_030 Hb_007054_050--Hb_008698_010 Hb_007054_050--Hb_000683_080 Hb_000122_210 Hb_000122_210 Hb_007054_050--Hb_000122_210 Hb_009615_180 Hb_009615_180 Hb_000184_030--Hb_009615_180 Hb_001294_030 Hb_001294_030 Hb_000184_030--Hb_001294_030 Hb_000062_520 Hb_000062_520 Hb_000184_030--Hb_000062_520 Hb_000184_030--Hb_000189_520 Hb_001484_080 Hb_001484_080 Hb_000184_030--Hb_001484_080 Hb_114861_010 Hb_114861_010 Hb_000184_030--Hb_114861_010 Hb_078477_060 Hb_078477_060 Hb_000014_190--Hb_078477_060 Hb_000014_190--Hb_003226_190 Hb_001080_030 Hb_001080_030 Hb_000014_190--Hb_001080_030 Hb_009620_060 Hb_009620_060 Hb_000014_190--Hb_009620_060 Hb_000014_190--Hb_000890_110 Hb_000963_090 Hb_000963_090 Hb_000014_190--Hb_000963_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200793 0.0334166 0.0308826 0.0820121 0.0188167 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.183714 0.108375 0.0668245 0.203015 0.743045

CAGE analysis