Hb_000184_030

Information

Type -
Description -
Location Contig184: 45748-53950
Sequence    

Annotation

kegg
ID rcu:RCOM_0690870
description Protein ABC1, mitochondrial precursor, putative
nr
ID XP_012081503.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
swissprot
ID P73627
description Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1
trembl
ID A0A067KDL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18518 PE=4 SV=1
Gene Ontology
ID GO:0016301
description uncharacterized aarf domain-containing protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17973: 46414-46603 , PASA_asmbl_17974: 46916-48402 , PASA_asmbl_17975: 49024-53212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_030 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
2 Hb_009615_180 0.1531087097 - - lipoic acid synthetase, putative [Ricinus communis]
3 Hb_001294_030 0.1563216632 - - PREDICTED: uncharacterized protein LOC105644307 [Jatropha curcas]
4 Hb_000062_520 0.1794104152 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000189_520 0.1806424395 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
6 Hb_001484_080 0.1817317324 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
7 Hb_114861_010 0.1820493199 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
8 Hb_161207_010 0.1835791379 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_001621_060 0.184106042 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
10 Hb_006856_030 0.1915105934 - - Uridine kinase-like protein 4 [Glycine soja]
11 Hb_001792_030 0.1940515206 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
12 Hb_000890_110 0.1972274425 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
13 Hb_000032_400 0.2000949241 - - PREDICTED: UDP-glucose 4-epimerase GEPI48 [Jatropha curcas]
14 Hb_000699_080 0.2041344437 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
15 Hb_000367_140 0.207031896 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
16 Hb_019613_010 0.2076166941 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_126917_010 0.2080835563 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
18 Hb_001755_030 0.2089898102 - - PREDICTED: D-glycerate 3-kinase, chloroplastic-like [Populus euphratica]
19 Hb_067069_010 0.2108725289 - - hypothetical protein JCGZ_11524 [Jatropha curcas]
20 Hb_000473_060 0.2109032618 - - PREDICTED: psbP domain-containing protein 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000184_030 Hb_000184_030 Hb_009615_180 Hb_009615_180 Hb_000184_030--Hb_009615_180 Hb_001294_030 Hb_001294_030 Hb_000184_030--Hb_001294_030 Hb_000062_520 Hb_000062_520 Hb_000184_030--Hb_000062_520 Hb_000189_520 Hb_000189_520 Hb_000184_030--Hb_000189_520 Hb_001484_080 Hb_001484_080 Hb_000184_030--Hb_001484_080 Hb_114861_010 Hb_114861_010 Hb_000184_030--Hb_114861_010 Hb_003226_190 Hb_003226_190 Hb_009615_180--Hb_003226_190 Hb_002783_150 Hb_002783_150 Hb_009615_180--Hb_002783_150 Hb_009615_180--Hb_001294_030 Hb_126917_010 Hb_126917_010 Hb_009615_180--Hb_126917_010 Hb_000352_220 Hb_000352_220 Hb_009615_180--Hb_000352_220 Hb_000152_480 Hb_000152_480 Hb_001294_030--Hb_000152_480 Hb_001755_030 Hb_001755_030 Hb_001294_030--Hb_001755_030 Hb_003935_080 Hb_003935_080 Hb_001294_030--Hb_003935_080 Hb_001621_060 Hb_001621_060 Hb_001294_030--Hb_001621_060 Hb_004109_160 Hb_004109_160 Hb_001294_030--Hb_004109_160 Hb_001792_030 Hb_001792_030 Hb_001294_030--Hb_001792_030 Hb_003106_170 Hb_003106_170 Hb_000062_520--Hb_003106_170 Hb_000062_520--Hb_001484_080 Hb_000667_140 Hb_000667_140 Hb_000062_520--Hb_000667_140 Hb_007044_250 Hb_007044_250 Hb_000062_520--Hb_007044_250 Hb_002304_180 Hb_002304_180 Hb_000062_520--Hb_002304_180 Hb_000977_270 Hb_000977_270 Hb_000062_520--Hb_000977_270 Hb_000189_520--Hb_001792_030 Hb_000866_050 Hb_000866_050 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_000189_520--Hb_001621_060 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_001484_080--Hb_007044_250 Hb_001484_080--Hb_000977_270 Hb_001484_080--Hb_003106_170 Hb_001484_080--Hb_114861_010 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060 Hb_114861_010--Hb_001792_030 Hb_114861_010--Hb_007044_250 Hb_114861_010--Hb_000189_520 Hb_005489_090 Hb_005489_090 Hb_114861_010--Hb_005489_090 Hb_000110_230 Hb_000110_230 Hb_114861_010--Hb_000110_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.337703 1.67658 3.98981 4.20493 0.637205 0.977622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.15443 6.94204 0.64516 2.30141 30.2995

CAGE analysis