Hb_052764_100

Information

Type -
Description -
Location Contig52764: 56467-66952
Sequence    

Annotation

kegg
ID rcu:RCOM_1062970
description beta-galactosidase, putative (EC:3.2.1.23)
nr
ID XP_012091518.1
description PREDICTED: beta-galactosidase 8-like [Jatropha curcas]
swissprot
ID Q9SCV4
description Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2
trembl
ID A0A067JLL1
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_21371 PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47125: 59797-62383 , PASA_asmbl_47126: 63772-65836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_100 0.0 - - PREDICTED: beta-galactosidase 8-like [Jatropha curcas]
2 Hb_004218_260 0.1643337989 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
3 Hb_010815_020 0.2266263628 - - unnamed protein product [Vitis vinifera]
4 Hb_000203_140 0.2337901895 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
5 Hb_002360_030 0.2339844383 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
6 Hb_000837_010 0.2431657943 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
7 Hb_007054_050 0.2495027738 - - -
8 Hb_000460_070 0.2516042473 - - luminal binding protein [Gossypium hirsutum]
9 Hb_000683_080 0.261315343 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
10 Hb_000035_020 0.2613349473 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
11 Hb_000172_190 0.2616645366 - - PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
12 Hb_172665_010 0.2625909825 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_001621_060 0.2669975345 - - PREDICTED: thylakoid lumenal 15 kDa protein 1, chloroplastic [Jatropha curcas]
14 Hb_004897_010 0.2674179851 - - -
15 Hb_000828_050 0.2716841621 - - unnamed protein product [Vitis vinifera]
16 Hb_021313_010 0.2719187878 - - hypothetical protein POPTR_0010s24380g [Populus trichocarpa]
17 Hb_000023_050 0.2752336133 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
18 Hb_001975_040 0.2755567061 rubber biosynthesis Gene Name: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Hevea brasiliensis]
19 Hb_019040_030 0.2767166514 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
20 Hb_054467_010 0.2788044011 - - -

Gene co-expression network

sample Hb_052764_100 Hb_052764_100 Hb_004218_260 Hb_004218_260 Hb_052764_100--Hb_004218_260 Hb_010815_020 Hb_010815_020 Hb_052764_100--Hb_010815_020 Hb_000203_140 Hb_000203_140 Hb_052764_100--Hb_000203_140 Hb_002360_030 Hb_002360_030 Hb_052764_100--Hb_002360_030 Hb_000837_010 Hb_000837_010 Hb_052764_100--Hb_000837_010 Hb_007054_050 Hb_007054_050 Hb_052764_100--Hb_007054_050 Hb_000683_080 Hb_000683_080 Hb_004218_260--Hb_000683_080 Hb_000460_070 Hb_000460_070 Hb_004218_260--Hb_000460_070 Hb_004218_260--Hb_007054_050 Hb_000184_030 Hb_000184_030 Hb_004218_260--Hb_000184_030 Hb_000014_190 Hb_000014_190 Hb_004218_260--Hb_000014_190 Hb_004897_010 Hb_004897_010 Hb_010815_020--Hb_004897_010 Hb_000286_200 Hb_000286_200 Hb_010815_020--Hb_000286_200 Hb_004870_040 Hb_004870_040 Hb_010815_020--Hb_004870_040 Hb_003098_080 Hb_003098_080 Hb_010815_020--Hb_003098_080 Hb_000172_190 Hb_000172_190 Hb_010815_020--Hb_000172_190 Hb_012022_050 Hb_012022_050 Hb_010815_020--Hb_012022_050 Hb_002131_030 Hb_002131_030 Hb_000203_140--Hb_002131_030 Hb_000203_140--Hb_000286_200 Hb_001221_340 Hb_001221_340 Hb_000203_140--Hb_001221_340 Hb_100886_010 Hb_100886_010 Hb_000203_140--Hb_100886_010 Hb_005227_040 Hb_005227_040 Hb_000203_140--Hb_005227_040 Hb_000203_140--Hb_004897_010 Hb_140459_010 Hb_140459_010 Hb_002360_030--Hb_140459_010 Hb_002360_030--Hb_005227_040 Hb_003124_110 Hb_003124_110 Hb_002360_030--Hb_003124_110 Hb_002360_030--Hb_007054_050 Hb_003186_040 Hb_003186_040 Hb_002360_030--Hb_003186_040 Hb_003211_030 Hb_003211_030 Hb_002360_030--Hb_003211_030 Hb_006938_050 Hb_006938_050 Hb_000837_010--Hb_006938_050 Hb_001558_050 Hb_001558_050 Hb_000837_010--Hb_001558_050 Hb_172665_010 Hb_172665_010 Hb_000837_010--Hb_172665_010 Hb_000837_010--Hb_004218_260 Hb_000837_010--Hb_000460_070 Hb_007054_050--Hb_000460_070 Hb_008698_010 Hb_008698_010 Hb_007054_050--Hb_008698_010 Hb_007054_050--Hb_000683_080 Hb_000122_210 Hb_000122_210 Hb_007054_050--Hb_000122_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.008532 0.199937 0.0935012 0.613608 0.00690068 0.0317177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.781902 0.947543 0.352666 1.43557 2.98911

CAGE analysis