Hb_004897_010

Information

Type -
Description -
Location Contig4897: 7012-9798
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45179: 7006-9276 , PASA_asmbl_45180: 7006-9267
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004897_010 0.0 - - -
2 Hb_010815_020 0.1103038022 - - unnamed protein product [Vitis vinifera]
3 Hb_000286_200 0.1436920922 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
4 Hb_000649_140 0.1515215644 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
5 Hb_000031_260 0.1594983691 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
6 Hb_000286_060 0.1604390108 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
7 Hb_001953_080 0.1660829837 - - pseudouridine synthase family protein, partial [Manihot esculenta]
8 Hb_000510_240 0.1661259115 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
9 Hb_000345_250 0.1671498093 - - cullin 1-like protein [Hevea brasiliensis]
10 Hb_012022_050 0.1680876381 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
11 Hb_000723_170 0.168703441 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
12 Hb_000685_050 0.1708880377 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
13 Hb_003106_100 0.1744105172 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
14 Hb_000227_070 0.1765807587 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
15 Hb_001242_140 0.1773013436 - - mitochondrial carrier protein, putative [Ricinus communis]
16 Hb_004870_040 0.1804931405 - - -
17 Hb_002876_020 0.1823931239 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
18 Hb_000187_040 0.1824604832 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
19 Hb_003880_040 0.1833889874 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
20 Hb_000700_040 0.1839033745 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]

Gene co-expression network

sample Hb_004897_010 Hb_004897_010 Hb_010815_020 Hb_010815_020 Hb_004897_010--Hb_010815_020 Hb_000286_200 Hb_000286_200 Hb_004897_010--Hb_000286_200 Hb_000649_140 Hb_000649_140 Hb_004897_010--Hb_000649_140 Hb_000031_260 Hb_000031_260 Hb_004897_010--Hb_000031_260 Hb_000286_060 Hb_000286_060 Hb_004897_010--Hb_000286_060 Hb_001953_080 Hb_001953_080 Hb_004897_010--Hb_001953_080 Hb_010815_020--Hb_000286_200 Hb_004870_040 Hb_004870_040 Hb_010815_020--Hb_004870_040 Hb_003098_080 Hb_003098_080 Hb_010815_020--Hb_003098_080 Hb_000172_190 Hb_000172_190 Hb_010815_020--Hb_000172_190 Hb_012022_050 Hb_012022_050 Hb_010815_020--Hb_012022_050 Hb_000510_240 Hb_000510_240 Hb_000286_200--Hb_000510_240 Hb_000227_070 Hb_000227_070 Hb_000286_200--Hb_000227_070 Hb_000012_410 Hb_000012_410 Hb_000286_200--Hb_000012_410 Hb_000286_200--Hb_000286_060 Hb_001452_210 Hb_001452_210 Hb_000286_200--Hb_001452_210 Hb_003106_100 Hb_003106_100 Hb_000649_140--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_000649_140--Hb_002876_020 Hb_000700_040 Hb_000700_040 Hb_000649_140--Hb_000700_040 Hb_001307_030 Hb_001307_030 Hb_000649_140--Hb_001307_030 Hb_011249_020 Hb_011249_020 Hb_000649_140--Hb_011249_020 Hb_000428_060 Hb_000428_060 Hb_000649_140--Hb_000428_060 Hb_000031_260--Hb_000286_060 Hb_000345_250 Hb_000345_250 Hb_000031_260--Hb_000345_250 Hb_000031_260--Hb_000227_070 Hb_001369_250 Hb_001369_250 Hb_000031_260--Hb_001369_250 Hb_010174_150 Hb_010174_150 Hb_000031_260--Hb_010174_150 Hb_003038_140 Hb_003038_140 Hb_000031_260--Hb_003038_140 Hb_010560_050 Hb_010560_050 Hb_000286_060--Hb_010560_050 Hb_001085_240 Hb_001085_240 Hb_000286_060--Hb_001085_240 Hb_001332_040 Hb_001332_040 Hb_000286_060--Hb_001332_040 Hb_000286_060--Hb_000227_070 Hb_003633_050 Hb_003633_050 Hb_000286_060--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_000286_060--Hb_000096_160 Hb_001953_080--Hb_011249_020 Hb_003020_260 Hb_003020_260 Hb_001953_080--Hb_003020_260 Hb_001953_080--Hb_001307_030 Hb_000297_120 Hb_000297_120 Hb_001953_080--Hb_000297_120 Hb_025098_010 Hb_025098_010 Hb_001953_080--Hb_025098_010 Hb_001953_080--Hb_000649_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.346382 0.218963 0.303089 2.15882 0.262943 0.553469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21037 2.67429 1.05988 2.80265 2.71693

CAGE analysis