Hb_000172_190

Information

Type -
Description -
Location Contig172: 226601-228020
Sequence    

Annotation

kegg
ID pop:POPTR_0005s08040g
description POPTRDRAFT_818294; senescence-associated family protein
nr
ID XP_012093182.1
description PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LEQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24081 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16131: 226774-227941
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_190 0.0 - - PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
2 Hb_000828_050 0.1692959165 - - unnamed protein product [Vitis vinifera]
3 Hb_010815_020 0.1793337281 - - unnamed protein product [Vitis vinifera]
4 Hb_000031_260 0.1796598712 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
5 Hb_003947_040 0.1821170952 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
6 Hb_000345_250 0.182284318 - - cullin 1-like protein [Hevea brasiliensis]
7 Hb_004897_010 0.1845920309 - - -
8 Hb_001621_010 0.1861427595 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
9 Hb_002539_020 0.1965883396 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
10 Hb_000286_200 0.209400986 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
11 Hb_000286_060 0.2111626831 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
12 Hb_100147_010 0.21167902 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
13 Hb_003098_080 0.2206229447 - - -
14 Hb_000252_110 0.2206486765 - - -
15 Hb_000139_340 0.2260835273 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004032_120 0.2275491885 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
17 Hb_003040_030 0.22780366 - - PREDICTED: NADP-dependent malic enzyme isoform X1 [Jatropha curcas]
18 Hb_001699_200 0.2299302892 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
19 Hb_000684_520 0.2301850398 - - glutathione S-transferase L3-like [Jatropha curcas]
20 Hb_001433_110 0.2312587424 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_190 Hb_000172_190 Hb_000828_050 Hb_000828_050 Hb_000172_190--Hb_000828_050 Hb_010815_020 Hb_010815_020 Hb_000172_190--Hb_010815_020 Hb_000031_260 Hb_000031_260 Hb_000172_190--Hb_000031_260 Hb_003947_040 Hb_003947_040 Hb_000172_190--Hb_003947_040 Hb_000345_250 Hb_000345_250 Hb_000172_190--Hb_000345_250 Hb_004897_010 Hb_004897_010 Hb_000172_190--Hb_004897_010 Hb_004136_030 Hb_004136_030 Hb_000828_050--Hb_004136_030 Hb_000252_110 Hb_000252_110 Hb_000828_050--Hb_000252_110 Hb_007199_010 Hb_007199_010 Hb_000828_050--Hb_007199_010 Hb_001621_010 Hb_001621_010 Hb_000828_050--Hb_001621_010 Hb_015690_010 Hb_015690_010 Hb_000828_050--Hb_015690_010 Hb_010815_020--Hb_004897_010 Hb_000286_200 Hb_000286_200 Hb_010815_020--Hb_000286_200 Hb_004870_040 Hb_004870_040 Hb_010815_020--Hb_004870_040 Hb_003098_080 Hb_003098_080 Hb_010815_020--Hb_003098_080 Hb_012022_050 Hb_012022_050 Hb_010815_020--Hb_012022_050 Hb_000286_060 Hb_000286_060 Hb_000031_260--Hb_000286_060 Hb_000031_260--Hb_000345_250 Hb_000227_070 Hb_000227_070 Hb_000031_260--Hb_000227_070 Hb_001369_250 Hb_001369_250 Hb_000031_260--Hb_001369_250 Hb_010174_150 Hb_010174_150 Hb_000031_260--Hb_010174_150 Hb_003038_140 Hb_003038_140 Hb_000031_260--Hb_003038_140 Hb_000061_090 Hb_000061_090 Hb_003947_040--Hb_000061_090 Hb_000879_190 Hb_000879_190 Hb_003947_040--Hb_000879_190 Hb_000675_060 Hb_000675_060 Hb_003947_040--Hb_000675_060 Hb_003947_040--Hb_000828_050 Hb_001699_200 Hb_001699_200 Hb_003947_040--Hb_001699_200 Hb_000345_250--Hb_000286_060 Hb_028487_170 Hb_028487_170 Hb_000345_250--Hb_028487_170 Hb_003291_020 Hb_003291_020 Hb_000345_250--Hb_003291_020 Hb_000700_040 Hb_000700_040 Hb_000345_250--Hb_000700_040 Hb_000685_050 Hb_000685_050 Hb_000345_250--Hb_000685_050 Hb_004897_010--Hb_000286_200 Hb_000649_140 Hb_000649_140 Hb_004897_010--Hb_000649_140 Hb_004897_010--Hb_000031_260 Hb_004897_010--Hb_000286_060 Hb_001953_080 Hb_001953_080 Hb_004897_010--Hb_001953_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82261 8.81984 10.5436 39.0861 0.688806 2.80012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.1279 33.8433 20.1253 88.6121 49.5329

CAGE analysis