Hb_007199_010

Information

Type -
Description -
Location Contig7199: 24045-26510
Sequence    

Annotation

kegg
ID cic:CICLE_v10028570mg
description hypothetical protein
nr
ID XP_010256925.1
description PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
swissprot
ID Q06548
description Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1
trembl
ID V4SC26
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028570mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55563: 25482-26263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007199_010 0.0 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
2 Hb_000828_050 0.1900900705 - - unnamed protein product [Vitis vinifera]
3 Hb_000061_090 0.2017811015 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
4 Hb_002291_010 0.2149130817 - - ring finger protein, putative [Ricinus communis]
5 Hb_007181_020 0.22197766 - - PREDICTED: uncharacterized protein At4g04980-like [Populus euphratica]
6 Hb_054467_010 0.2306522921 - - -
7 Hb_002774_110 0.2372433174 - - heat shock protein binding protein, putative [Ricinus communis]
8 Hb_015690_010 0.2396298406 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g038521mg [Citrus sinensis]
9 Hb_005144_110 0.240755841 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
10 Hb_000203_140 0.2410555244 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
11 Hb_007747_180 0.2431418901 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
12 Hb_001171_050 0.2510020745 - - PREDICTED: uncharacterized protein DDB_G0284459 [Jatropha curcas]
13 Hb_003947_040 0.2515009939 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
14 Hb_000172_190 0.2543359415 - - PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
15 Hb_029385_010 0.260633335 - - CTP synthase family protein [Populus trichocarpa]
16 Hb_100147_010 0.2621364637 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
17 Hb_029904_010 0.2638098504 - - PREDICTED: uncharacterized protein LOC105635075 [Jatropha curcas]
18 Hb_017170_030 0.2659230031 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
19 Hb_024468_010 0.2674916937 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
20 Hb_010422_070 0.2677991378 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]

Gene co-expression network

sample Hb_007199_010 Hb_007199_010 Hb_000828_050 Hb_000828_050 Hb_007199_010--Hb_000828_050 Hb_000061_090 Hb_000061_090 Hb_007199_010--Hb_000061_090 Hb_002291_010 Hb_002291_010 Hb_007199_010--Hb_002291_010 Hb_007181_020 Hb_007181_020 Hb_007199_010--Hb_007181_020 Hb_054467_010 Hb_054467_010 Hb_007199_010--Hb_054467_010 Hb_002774_110 Hb_002774_110 Hb_007199_010--Hb_002774_110 Hb_004136_030 Hb_004136_030 Hb_000828_050--Hb_004136_030 Hb_000172_190 Hb_000172_190 Hb_000828_050--Hb_000172_190 Hb_000252_110 Hb_000252_110 Hb_000828_050--Hb_000252_110 Hb_001621_010 Hb_001621_010 Hb_000828_050--Hb_001621_010 Hb_015690_010 Hb_015690_010 Hb_000828_050--Hb_015690_010 Hb_000414_110 Hb_000414_110 Hb_000061_090--Hb_000414_110 Hb_000879_190 Hb_000879_190 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_000011_290 Hb_000011_290 Hb_000061_090--Hb_000011_290 Hb_003947_040 Hb_003947_040 Hb_000061_090--Hb_003947_040 Hb_002539_020 Hb_002539_020 Hb_000061_090--Hb_002539_020 Hb_001486_030 Hb_001486_030 Hb_002291_010--Hb_001486_030 Hb_028811_010 Hb_028811_010 Hb_002291_010--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_002291_010--Hb_001341_100 Hb_003207_010 Hb_003207_010 Hb_002291_010--Hb_003207_010 Hb_001171_050 Hb_001171_050 Hb_002291_010--Hb_001171_050 Hb_004064_010 Hb_004064_010 Hb_002291_010--Hb_004064_010 Hb_119504_010 Hb_119504_010 Hb_007181_020--Hb_119504_010 Hb_001780_120 Hb_001780_120 Hb_007181_020--Hb_001780_120 Hb_002078_440 Hb_002078_440 Hb_007181_020--Hb_002078_440 Hb_013893_010 Hb_013893_010 Hb_007181_020--Hb_013893_010 Hb_000856_150 Hb_000856_150 Hb_007181_020--Hb_000856_150 Hb_000460_070 Hb_000460_070 Hb_054467_010--Hb_000460_070 Hb_010422_070 Hb_010422_070 Hb_054467_010--Hb_010422_070 Hb_005167_020 Hb_005167_020 Hb_054467_010--Hb_005167_020 Hb_156182_010 Hb_156182_010 Hb_054467_010--Hb_156182_010 Hb_054467_010--Hb_007181_020 Hb_002783_110 Hb_002783_110 Hb_002774_110--Hb_002783_110 Hb_005144_110 Hb_005144_110 Hb_002774_110--Hb_005144_110 Hb_000059_010 Hb_000059_010 Hb_002774_110--Hb_000059_010 Hb_001604_150 Hb_001604_150 Hb_002774_110--Hb_001604_150 Hb_000614_170 Hb_000614_170 Hb_002774_110--Hb_000614_170 Hb_001102_210 Hb_001102_210 Hb_002774_110--Hb_001102_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.580377 0.433468 0.73645 0.215399 0.079938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.68038 2.33288 3.45138 5.54941 3.24717

CAGE analysis