Hb_007181_020

Information

Type -
Description -
Location Contig7181: 48372-52353
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04690g
description hydroxyproline-rich glycoprotein
nr
ID XP_011047844.1
description PREDICTED: uncharacterized protein At4g04980-like [Populus euphratica]
swissprot
ID Q1PEB4
description Uncharacterized protein At4g04980 OS=Arabidopsis thaliana GN=At4g04980 PE=2 SV=1
trembl
ID B9HYL6
description Hydroxyproline-rich glycoprotein OS=Populus trichocarpa GN=POPTR_0011s04690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007181_020 0.0 - - PREDICTED: uncharacterized protein At4g04980-like [Populus euphratica]
2 Hb_007199_010 0.22197766 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
3 Hb_119504_010 0.2227912544 - - hypothetical protein JCGZ_15304 [Jatropha curcas]
4 Hb_001780_120 0.2312854385 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
5 Hb_002078_440 0.2364142428 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
6 Hb_013893_010 0.2488609225 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
7 Hb_000856_150 0.2496616629 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
8 Hb_042202_060 0.2550891675 - - PREDICTED: probable glycosyltransferase At5g03795 [Jatropha curcas]
9 Hb_007943_190 0.2576502339 - - cytoplasmic dynein light chain, putative [Ricinus communis]
10 Hb_005144_110 0.2584105217 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
11 Hb_005054_270 0.2605236254 - - -
12 Hb_001222_050 0.2629409587 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
13 Hb_000077_060 0.2640087133 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
14 Hb_001357_010 0.2643128533 - - -
15 Hb_001102_210 0.2647023245 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
16 Hb_006738_030 0.2665968166 - - Ras-related protein Rab7 [Morus notabilis]
17 Hb_000389_050 0.2692001419 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
18 Hb_000059_010 0.2706952664 - - amino acid binding protein, putative [Ricinus communis]
19 Hb_008760_010 0.2714241801 - - berberine bridge enzyme [Hevea brasiliensis]
20 Hb_001433_130 0.2715611762 - - PREDICTED: uncharacterized protein LOC105647468 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007181_020 Hb_007181_020 Hb_007199_010 Hb_007199_010 Hb_007181_020--Hb_007199_010 Hb_119504_010 Hb_119504_010 Hb_007181_020--Hb_119504_010 Hb_001780_120 Hb_001780_120 Hb_007181_020--Hb_001780_120 Hb_002078_440 Hb_002078_440 Hb_007181_020--Hb_002078_440 Hb_013893_010 Hb_013893_010 Hb_007181_020--Hb_013893_010 Hb_000856_150 Hb_000856_150 Hb_007181_020--Hb_000856_150 Hb_000828_050 Hb_000828_050 Hb_007199_010--Hb_000828_050 Hb_000061_090 Hb_000061_090 Hb_007199_010--Hb_000061_090 Hb_002291_010 Hb_002291_010 Hb_007199_010--Hb_002291_010 Hb_054467_010 Hb_054467_010 Hb_007199_010--Hb_054467_010 Hb_002774_110 Hb_002774_110 Hb_007199_010--Hb_002774_110 Hb_119504_010--Hb_001780_120 Hb_094900_010 Hb_094900_010 Hb_119504_010--Hb_094900_010 Hb_009005_050 Hb_009005_050 Hb_119504_010--Hb_009005_050 Hb_000915_030 Hb_000915_030 Hb_119504_010--Hb_000915_030 Hb_000679_220 Hb_000679_220 Hb_119504_010--Hb_000679_220 Hb_001523_020 Hb_001523_020 Hb_001780_120--Hb_001523_020 Hb_001222_050 Hb_001222_050 Hb_001780_120--Hb_001222_050 Hb_001035_070 Hb_001035_070 Hb_001780_120--Hb_001035_070 Hb_000422_120 Hb_000422_120 Hb_001780_120--Hb_000422_120 Hb_004553_020 Hb_004553_020 Hb_001780_120--Hb_004553_020 Hb_001102_210 Hb_001102_210 Hb_002078_440--Hb_001102_210 Hb_013405_140 Hb_013405_140 Hb_002078_440--Hb_013405_140 Hb_003783_030 Hb_003783_030 Hb_002078_440--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_002078_440--Hb_011021_040 Hb_000340_310 Hb_000340_310 Hb_002078_440--Hb_000340_310 Hb_000140_360 Hb_000140_360 Hb_002078_440--Hb_000140_360 Hb_083380_010 Hb_083380_010 Hb_013893_010--Hb_083380_010 Hb_003117_010 Hb_003117_010 Hb_013893_010--Hb_003117_010 Hb_027751_060 Hb_027751_060 Hb_013893_010--Hb_027751_060 Hb_000056_250 Hb_000056_250 Hb_013893_010--Hb_000056_250 Hb_092107_010 Hb_092107_010 Hb_013893_010--Hb_092107_010 Hb_023344_050 Hb_023344_050 Hb_013893_010--Hb_023344_050 Hb_008725_170 Hb_008725_170 Hb_000856_150--Hb_008725_170 Hb_000020_120 Hb_000020_120 Hb_000856_150--Hb_000020_120 Hb_001511_070 Hb_001511_070 Hb_000856_150--Hb_001511_070 Hb_002205_130 Hb_002205_130 Hb_000856_150--Hb_002205_130 Hb_000116_430 Hb_000116_430 Hb_000856_150--Hb_000116_430 Hb_000076_020 Hb_000076_020 Hb_000856_150--Hb_000076_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0403003 0.0178824 0.0933299 0.00715019 0.0138506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.138697 0.204637 0.546356 0.200421 0.31911

CAGE analysis