Hb_015690_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig15690: 7481-9744
Sequence    

Annotation

kegg
ID pop:POPTR_0019s097702
description hypothetical protein
nr
ID KDO40111.1
description hypothetical protein CISIN_1g038521mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DNE3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038521mg PE=4 SV=1
Gene Ontology
ID GO:0043531
description leucine-rich repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13661: 6078-7598 , PASA_asmbl_13662: 7603-9371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015690_010 0.0 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g038521mg [Citrus sinensis]
2 Hb_001486_030 0.162515088 - - conserved hypothetical protein [Ricinus communis]
3 Hb_108329_020 0.1677109987 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
4 Hb_043485_010 0.168889635 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
5 Hb_083820_010 0.1956143772 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
6 Hb_000227_070 0.2016155573 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
7 Hb_001246_030 0.201789028 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
8 Hb_109002_020 0.202932881 - - PREDICTED: CTP synthase-like [Jatropha curcas]
9 Hb_000510_240 0.2035842126 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
10 Hb_000685_050 0.2055269873 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
11 Hb_119494_010 0.2058997201 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
12 Hb_002311_340 0.2067198614 - - phospholipase d zeta, putative [Ricinus communis]
13 Hb_024468_010 0.2069120776 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
14 Hb_105602_010 0.2071969784 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
15 Hb_002005_100 0.207833614 - - -
16 Hb_004079_080 0.207933036 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
17 Hb_016522_010 0.2093918456 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
18 Hb_014894_010 0.2097771849 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
19 Hb_000215_360 0.2099043118 - - Uncharacterized protein isoform 2 [Theobroma cacao]
20 Hb_007763_030 0.2115492821 - - PREDICTED: uncharacterized protein LOC105638154 [Jatropha curcas]

Gene co-expression network

sample Hb_015690_010 Hb_015690_010 Hb_001486_030 Hb_001486_030 Hb_015690_010--Hb_001486_030 Hb_108329_020 Hb_108329_020 Hb_015690_010--Hb_108329_020 Hb_043485_010 Hb_043485_010 Hb_015690_010--Hb_043485_010 Hb_083820_010 Hb_083820_010 Hb_015690_010--Hb_083820_010 Hb_000227_070 Hb_000227_070 Hb_015690_010--Hb_000227_070 Hb_001246_030 Hb_001246_030 Hb_015690_010--Hb_001246_030 Hb_028811_010 Hb_028811_010 Hb_001486_030--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_001486_030--Hb_001341_100 Hb_004064_010 Hb_004064_010 Hb_001486_030--Hb_004064_010 Hb_109002_020 Hb_109002_020 Hb_001486_030--Hb_109002_020 Hb_119494_010 Hb_119494_010 Hb_001486_030--Hb_119494_010 Hb_003442_070 Hb_003442_070 Hb_001486_030--Hb_003442_070 Hb_004993_060 Hb_004993_060 Hb_108329_020--Hb_004993_060 Hb_108329_020--Hb_109002_020 Hb_007044_050 Hb_007044_050 Hb_108329_020--Hb_007044_050 Hb_108329_020--Hb_001486_030 Hb_008770_040 Hb_008770_040 Hb_108329_020--Hb_008770_040 Hb_002311_340 Hb_002311_340 Hb_108329_020--Hb_002311_340 Hb_043485_010--Hb_108329_020 Hb_043485_010--Hb_083820_010 Hb_043485_010--Hb_001486_030 Hb_043485_010--Hb_001246_030 Hb_008147_070 Hb_008147_070 Hb_043485_010--Hb_008147_070 Hb_083820_010--Hb_002311_340 Hb_004449_080 Hb_004449_080 Hb_083820_010--Hb_004449_080 Hb_002005_100 Hb_002005_100 Hb_083820_010--Hb_002005_100 Hb_002713_010 Hb_002713_010 Hb_083820_010--Hb_002713_010 Hb_000009_180 Hb_000009_180 Hb_083820_010--Hb_000009_180 Hb_000510_240 Hb_000510_240 Hb_000227_070--Hb_000510_240 Hb_016522_010 Hb_016522_010 Hb_000227_070--Hb_016522_010 Hb_010174_150 Hb_010174_150 Hb_000227_070--Hb_010174_150 Hb_001085_240 Hb_001085_240 Hb_000227_070--Hb_001085_240 Hb_000096_160 Hb_000096_160 Hb_000227_070--Hb_000096_160 Hb_179924_010 Hb_179924_010 Hb_000227_070--Hb_179924_010 Hb_014894_010 Hb_014894_010 Hb_001246_030--Hb_014894_010 Hb_001157_110 Hb_001157_110 Hb_001246_030--Hb_001157_110 Hb_000497_110 Hb_000497_110 Hb_001246_030--Hb_000497_110 Hb_098315_080 Hb_098315_080 Hb_001246_030--Hb_098315_080 Hb_001246_030--Hb_119494_010 Hb_001246_030--Hb_002005_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0605973 1.13634 0.145502 0.686138 0.143886 0.87415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.55217 1.5682 1.50909 3.01312 1.33475

CAGE analysis