Hb_002713_010

Information

Type -
Description -
Location Contig2713: 9112-14874
Sequence    

Annotation

kegg
ID rcu:RCOM_1343590
description multidrug resistance protein 1, 2, putative (EC:3.6.3.27 3.6.3.44)
nr
ID XP_002515187.1
description multidrug resistance protein 1, 2, putative [Ricinus communis]
swissprot
ID O80725
description ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1
trembl
ID B9RN48
description Multidrug resistance protein 1, 2, putative OS=Ricinus communis GN=RCOM_1343590 PE=3 SV=1
Gene Ontology
ID GO:0016021
description abc transporter b family member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28424: 12250-12447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002713_010 0.0 - - multidrug resistance protein 1, 2, putative [Ricinus communis]
2 Hb_069150_010 0.1342987675 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
3 Hb_000739_300 0.1511694284 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
4 Hb_002534_120 0.1595228364 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
5 Hb_003529_170 0.1613059829 - - PREDICTED: ATP-dependent RNA helicase DHX29 [Jatropha curcas]
6 Hb_000009_180 0.1626470625 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
7 Hb_000920_300 0.1634493673 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
8 Hb_002641_030 0.1660910654 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
9 Hb_000003_320 0.1666327001 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 24 [Jatropha curcas]
10 Hb_001329_160 0.1711486066 - - PREDICTED: uncharacterized protein LOC105642679 isoform X1 [Jatropha curcas]
11 Hb_007017_010 0.1719307898 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
12 Hb_000120_820 0.1731466124 - - dihydrodipicolinate synthase, putative [Ricinus communis]
13 Hb_000175_100 0.1746020386 - - protein kinase, putative [Ricinus communis]
14 Hb_001860_050 0.1747345338 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Jatropha curcas]
15 Hb_003494_230 0.1748049925 - - starch synthase isoform II [Manihot esculenta]
16 Hb_004781_010 0.1753572993 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
17 Hb_002759_150 0.1763464156 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 22 isoform X1 [Jatropha curcas]
18 Hb_008959_020 0.1764959403 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
19 Hb_010775_040 0.1767544107 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
20 Hb_004934_050 0.1773460591 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_002713_010 Hb_002713_010 Hb_069150_010 Hb_069150_010 Hb_002713_010--Hb_069150_010 Hb_000739_300 Hb_000739_300 Hb_002713_010--Hb_000739_300 Hb_002534_120 Hb_002534_120 Hb_002713_010--Hb_002534_120 Hb_003529_170 Hb_003529_170 Hb_002713_010--Hb_003529_170 Hb_000009_180 Hb_000009_180 Hb_002713_010--Hb_000009_180 Hb_000920_300 Hb_000920_300 Hb_002713_010--Hb_000920_300 Hb_006478_040 Hb_006478_040 Hb_069150_010--Hb_006478_040 Hb_000072_170 Hb_000072_170 Hb_069150_010--Hb_000072_170 Hb_002994_030 Hb_002994_030 Hb_069150_010--Hb_002994_030 Hb_069150_010--Hb_000739_300 Hb_000000_230 Hb_000000_230 Hb_069150_010--Hb_000000_230 Hb_000419_020 Hb_000419_020 Hb_000739_300--Hb_000419_020 Hb_000136_260 Hb_000136_260 Hb_000739_300--Hb_000136_260 Hb_010423_030 Hb_010423_030 Hb_000739_300--Hb_010423_030 Hb_000948_160 Hb_000948_160 Hb_000739_300--Hb_000948_160 Hb_000099_150 Hb_000099_150 Hb_000739_300--Hb_000099_150 Hb_002271_010 Hb_002271_010 Hb_000739_300--Hb_002271_010 Hb_000504_070 Hb_000504_070 Hb_002534_120--Hb_000504_070 Hb_002232_360 Hb_002232_360 Hb_002534_120--Hb_002232_360 Hb_001671_100 Hb_001671_100 Hb_002534_120--Hb_001671_100 Hb_000392_430 Hb_000392_430 Hb_002534_120--Hb_000392_430 Hb_002534_120--Hb_002271_010 Hb_007416_120 Hb_007416_120 Hb_002534_120--Hb_007416_120 Hb_006198_120 Hb_006198_120 Hb_003529_170--Hb_006198_120 Hb_005271_190 Hb_005271_190 Hb_003529_170--Hb_005271_190 Hb_002641_030 Hb_002641_030 Hb_003529_170--Hb_002641_030 Hb_000538_160 Hb_000538_160 Hb_003529_170--Hb_000538_160 Hb_001266_100 Hb_001266_100 Hb_003529_170--Hb_001266_100 Hb_001614_060 Hb_001614_060 Hb_003529_170--Hb_001614_060 Hb_008770_030 Hb_008770_030 Hb_000009_180--Hb_008770_030 Hb_032278_030 Hb_032278_030 Hb_000009_180--Hb_032278_030 Hb_003994_060 Hb_003994_060 Hb_000009_180--Hb_003994_060 Hb_004453_050 Hb_004453_050 Hb_000009_180--Hb_004453_050 Hb_002097_200 Hb_002097_200 Hb_000009_180--Hb_002097_200 Hb_000304_030 Hb_000304_030 Hb_000009_180--Hb_000304_030 Hb_003913_070 Hb_003913_070 Hb_000920_300--Hb_003913_070 Hb_002456_010 Hb_002456_010 Hb_000920_300--Hb_002456_010 Hb_000920_300--Hb_002641_030 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_004934_050 Hb_004934_050 Hb_000920_300--Hb_004934_050 Hb_000920_300--Hb_001671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.548918 1.48462 0.348161 0.390754 0.405858 0.863474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.729962 2.0367 0.451234 1.67902 1.04423

CAGE analysis