Hb_043485_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig43485: 9-1773
Sequence    

Annotation

kegg
ID rcu:RCOM_0740720
description leucine-rich repeat-containing protein, putative
nr
ID XP_012076908.1
description PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
swissprot
ID Q9FL92
description Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1
trembl
ID B9SHM4
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0740720 PE=4 SV=1
Gene Ontology
ID GO:0043531
description protein suppressor of npr1- constitutive 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42432: 399-552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_043485_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
2 Hb_108329_020 0.1418244084 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
3 Hb_083820_010 0.159200528 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
4 Hb_001486_030 0.1658249486 - - conserved hypothetical protein [Ricinus communis]
5 Hb_015690_010 0.168889635 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g038521mg [Citrus sinensis]
6 Hb_001246_030 0.1690269683 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
7 Hb_008147_070 0.1714783335 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
8 Hb_003609_020 0.1752716484 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
9 Hb_004449_080 0.1878070548 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
10 Hb_005433_060 0.1929621803 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
11 Hb_028811_010 0.1936829745 - - PREDICTED: uncharacterized protein LOC105650178 isoform X1 [Jatropha curcas]
12 Hb_014894_010 0.1953798061 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
13 Hb_109002_020 0.1956738926 - - PREDICTED: CTP synthase-like [Jatropha curcas]
14 Hb_001053_090 0.1968451565 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
15 Hb_001969_090 0.1977581899 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
16 Hb_077562_030 0.1992197158 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
17 Hb_002823_010 0.1995724443 - - -
18 Hb_172632_110 0.2008201903 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
19 Hb_119494_010 0.2016221479 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
20 Hb_082182_010 0.2033163731 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_043485_010 Hb_043485_010 Hb_108329_020 Hb_108329_020 Hb_043485_010--Hb_108329_020 Hb_083820_010 Hb_083820_010 Hb_043485_010--Hb_083820_010 Hb_001486_030 Hb_001486_030 Hb_043485_010--Hb_001486_030 Hb_015690_010 Hb_015690_010 Hb_043485_010--Hb_015690_010 Hb_001246_030 Hb_001246_030 Hb_043485_010--Hb_001246_030 Hb_008147_070 Hb_008147_070 Hb_043485_010--Hb_008147_070 Hb_004993_060 Hb_004993_060 Hb_108329_020--Hb_004993_060 Hb_109002_020 Hb_109002_020 Hb_108329_020--Hb_109002_020 Hb_007044_050 Hb_007044_050 Hb_108329_020--Hb_007044_050 Hb_108329_020--Hb_001486_030 Hb_008770_040 Hb_008770_040 Hb_108329_020--Hb_008770_040 Hb_002311_340 Hb_002311_340 Hb_108329_020--Hb_002311_340 Hb_083820_010--Hb_002311_340 Hb_004449_080 Hb_004449_080 Hb_083820_010--Hb_004449_080 Hb_002005_100 Hb_002005_100 Hb_083820_010--Hb_002005_100 Hb_002713_010 Hb_002713_010 Hb_083820_010--Hb_002713_010 Hb_000009_180 Hb_000009_180 Hb_083820_010--Hb_000009_180 Hb_028811_010 Hb_028811_010 Hb_001486_030--Hb_028811_010 Hb_001341_100 Hb_001341_100 Hb_001486_030--Hb_001341_100 Hb_004064_010 Hb_004064_010 Hb_001486_030--Hb_004064_010 Hb_001486_030--Hb_109002_020 Hb_119494_010 Hb_119494_010 Hb_001486_030--Hb_119494_010 Hb_003442_070 Hb_003442_070 Hb_001486_030--Hb_003442_070 Hb_015690_010--Hb_001486_030 Hb_015690_010--Hb_108329_020 Hb_015690_010--Hb_083820_010 Hb_000227_070 Hb_000227_070 Hb_015690_010--Hb_000227_070 Hb_015690_010--Hb_001246_030 Hb_014894_010 Hb_014894_010 Hb_001246_030--Hb_014894_010 Hb_001157_110 Hb_001157_110 Hb_001246_030--Hb_001157_110 Hb_000497_110 Hb_000497_110 Hb_001246_030--Hb_000497_110 Hb_098315_080 Hb_098315_080 Hb_001246_030--Hb_098315_080 Hb_001246_030--Hb_119494_010 Hb_001246_030--Hb_002005_100 Hb_001021_080 Hb_001021_080 Hb_008147_070--Hb_001021_080 Hb_008147_070--Hb_119494_010 Hb_077562_030 Hb_077562_030 Hb_008147_070--Hb_077562_030 Hb_008147_070--Hb_109002_020 Hb_002400_410 Hb_002400_410 Hb_008147_070--Hb_002400_410 Hb_172632_110 Hb_172632_110 Hb_008147_070--Hb_172632_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.48419 6.80809 0.339827 1.33184 1.16839 3.67576
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.81699 3.32969 7.55588 10.475 3.99346

CAGE analysis