Hb_083820_010

Information

Type -
Description -
Location Contig83820: 3-836
Sequence    

Annotation

kegg
ID rcu:RCOM_0724600
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.11.25)
nr
ID KDP27374.1
description hypothetical protein JCGZ_20198 [Jatropha curcas]
swissprot
ID Q54IP4
description Dual specificity protein kinase shkB OS=Dictyostelium discoideum GN=shkB PE=3 SV=1
trembl
ID A0A067K6D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20198 PE=4 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rks1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_083820_010 0.0 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
2 Hb_043485_010 0.159200528 desease resistance Gene Name: NB-ARC PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X2 [Jatropha curcas]
3 Hb_002311_340 0.174356154 - - phospholipase d zeta, putative [Ricinus communis]
4 Hb_004449_080 0.1745912408 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
5 Hb_002005_100 0.1838279431 - - -
6 Hb_002713_010 0.1843438997 - - multidrug resistance protein 1, 2, putative [Ricinus communis]
7 Hb_000009_180 0.1890032551 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
8 Hb_062007_010 0.1911043868 - - PREDICTED: argininosuccinate lyase, chloroplastic [Jatropha curcas]
9 Hb_002338_050 0.19247471 - - PREDICTED: uncharacterized protein LOC105118489 isoform X1 [Populus euphratica]
10 Hb_146109_010 0.1942545055 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001227_080 0.1943949561 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_077562_030 0.1948970862 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
13 Hb_015690_010 0.1956143772 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g038521mg [Citrus sinensis]
14 Hb_000007_450 0.1958871488 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
15 Hb_000116_430 0.1966164558 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
16 Hb_001246_030 0.1967626488 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
17 Hb_019337_020 0.197677649 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]
18 Hb_000025_790 0.1985339938 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
19 Hb_108329_020 0.1990230357 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
20 Hb_002585_020 0.199075166 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18485-like [Populus euphratica]

Gene co-expression network

sample Hb_083820_010 Hb_083820_010 Hb_043485_010 Hb_043485_010 Hb_083820_010--Hb_043485_010 Hb_002311_340 Hb_002311_340 Hb_083820_010--Hb_002311_340 Hb_004449_080 Hb_004449_080 Hb_083820_010--Hb_004449_080 Hb_002005_100 Hb_002005_100 Hb_083820_010--Hb_002005_100 Hb_002713_010 Hb_002713_010 Hb_083820_010--Hb_002713_010 Hb_000009_180 Hb_000009_180 Hb_083820_010--Hb_000009_180 Hb_108329_020 Hb_108329_020 Hb_043485_010--Hb_108329_020 Hb_001486_030 Hb_001486_030 Hb_043485_010--Hb_001486_030 Hb_015690_010 Hb_015690_010 Hb_043485_010--Hb_015690_010 Hb_001246_030 Hb_001246_030 Hb_043485_010--Hb_001246_030 Hb_008147_070 Hb_008147_070 Hb_043485_010--Hb_008147_070 Hb_003847_030 Hb_003847_030 Hb_002311_340--Hb_003847_030 Hb_000504_070 Hb_000504_070 Hb_002311_340--Hb_000504_070 Hb_028227_070 Hb_028227_070 Hb_002311_340--Hb_028227_070 Hb_109002_020 Hb_109002_020 Hb_002311_340--Hb_109002_020 Hb_001414_030 Hb_001414_030 Hb_002311_340--Hb_001414_030 Hb_142343_010 Hb_142343_010 Hb_002311_340--Hb_142343_010 Hb_000028_390 Hb_000028_390 Hb_004449_080--Hb_000028_390 Hb_003370_050 Hb_003370_050 Hb_004449_080--Hb_003370_050 Hb_006909_010 Hb_006909_010 Hb_004449_080--Hb_006909_010 Hb_164898_010 Hb_164898_010 Hb_004449_080--Hb_164898_010 Hb_003294_090 Hb_003294_090 Hb_004449_080--Hb_003294_090 Hb_019337_020 Hb_019337_020 Hb_004449_080--Hb_019337_020 Hb_119494_010 Hb_119494_010 Hb_002005_100--Hb_119494_010 Hb_000190_090 Hb_000190_090 Hb_002005_100--Hb_000190_090 Hb_019053_030 Hb_019053_030 Hb_002005_100--Hb_019053_030 Hb_004411_060 Hb_004411_060 Hb_002005_100--Hb_004411_060 Hb_001214_090 Hb_001214_090 Hb_002005_100--Hb_001214_090 Hb_016522_010 Hb_016522_010 Hb_002005_100--Hb_016522_010 Hb_069150_010 Hb_069150_010 Hb_002713_010--Hb_069150_010 Hb_000739_300 Hb_000739_300 Hb_002713_010--Hb_000739_300 Hb_002534_120 Hb_002534_120 Hb_002713_010--Hb_002534_120 Hb_003529_170 Hb_003529_170 Hb_002713_010--Hb_003529_170 Hb_002713_010--Hb_000009_180 Hb_000920_300 Hb_000920_300 Hb_002713_010--Hb_000920_300 Hb_008770_030 Hb_008770_030 Hb_000009_180--Hb_008770_030 Hb_032278_030 Hb_032278_030 Hb_000009_180--Hb_032278_030 Hb_003994_060 Hb_003994_060 Hb_000009_180--Hb_003994_060 Hb_004453_050 Hb_004453_050 Hb_000009_180--Hb_004453_050 Hb_002097_200 Hb_002097_200 Hb_000009_180--Hb_002097_200 Hb_000304_030 Hb_000304_030 Hb_000009_180--Hb_000304_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.738592 2.07358 0.386941 0.407474 0.385283 2.71261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32187 2.07793 1.95958 3.64261 2.16947

CAGE analysis