Hb_004136_030

Information

Type -
Description -
Location Contig4136: 17417-19818
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004136_030 0.0 - - -
2 Hb_000828_050 0.1690415707 - - unnamed protein product [Vitis vinifera]
3 Hb_000252_110 0.1721145192 - - -
4 Hb_004453_080 0.2036339278 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
5 Hb_001366_070 0.2100777247 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
6 Hb_001433_110 0.2106029127 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
7 Hb_002374_380 0.2173870299 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
8 Hb_021888_070 0.2213113213 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
9 Hb_000692_010 0.2237388525 - - PREDICTED: uncharacterized protein LOC105635295 [Jatropha curcas]
10 Hb_002042_080 0.2254626981 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
11 Hb_000041_240 0.227954018 - - glutaredoxin [Hevea brasiliensis]
12 Hb_000836_140 0.2309206761 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
13 Hb_001387_020 0.2377286005 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
14 Hb_001059_120 0.2391143199 - - NADH dehydrogenase, putative [Ricinus communis]
15 Hb_001621_010 0.2400460255 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
16 Hb_000096_130 0.2469165646 - - hypothetical protein 23 [Hevea brasiliensis]
17 Hb_007850_080 0.2478621617 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
18 Hb_005656_100 0.2487458859 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003442_070 0.2514353986 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
20 Hb_004931_100 0.2532791332 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_004136_030 Hb_004136_030 Hb_000828_050 Hb_000828_050 Hb_004136_030--Hb_000828_050 Hb_000252_110 Hb_000252_110 Hb_004136_030--Hb_000252_110 Hb_004453_080 Hb_004453_080 Hb_004136_030--Hb_004453_080 Hb_001366_070 Hb_001366_070 Hb_004136_030--Hb_001366_070 Hb_001433_110 Hb_001433_110 Hb_004136_030--Hb_001433_110 Hb_002374_380 Hb_002374_380 Hb_004136_030--Hb_002374_380 Hb_000172_190 Hb_000172_190 Hb_000828_050--Hb_000172_190 Hb_000828_050--Hb_000252_110 Hb_007199_010 Hb_007199_010 Hb_000828_050--Hb_007199_010 Hb_001621_010 Hb_001621_010 Hb_000828_050--Hb_001621_010 Hb_015690_010 Hb_015690_010 Hb_000828_050--Hb_015690_010 Hb_000252_110--Hb_004453_080 Hb_005656_100 Hb_005656_100 Hb_000252_110--Hb_005656_100 Hb_000041_240 Hb_000041_240 Hb_000252_110--Hb_000041_240 Hb_004931_100 Hb_004931_100 Hb_000252_110--Hb_004931_100 Hb_001171_050 Hb_001171_050 Hb_000252_110--Hb_001171_050 Hb_000252_110--Hb_001433_110 Hb_007850_080 Hb_007850_080 Hb_004453_080--Hb_007850_080 Hb_004453_080--Hb_001433_110 Hb_028487_170 Hb_028487_170 Hb_004453_080--Hb_028487_170 Hb_003442_070 Hb_003442_070 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080 Hb_003849_270 Hb_003849_270 Hb_001366_070--Hb_003849_270 Hb_001493_120 Hb_001493_120 Hb_001366_070--Hb_001493_120 Hb_002042_080 Hb_002042_080 Hb_001366_070--Hb_002042_080 Hb_001366_070--Hb_000828_050 Hb_001059_120 Hb_001059_120 Hb_001366_070--Hb_001059_120 Hb_001433_110--Hb_002374_380 Hb_001221_570 Hb_001221_570 Hb_001433_110--Hb_001221_570 Hb_001433_110--Hb_028487_170 Hb_001433_110--Hb_001059_120 Hb_000694_060 Hb_000694_060 Hb_002374_380--Hb_000694_060 Hb_002374_380--Hb_004453_080 Hb_105602_010 Hb_105602_010 Hb_002374_380--Hb_105602_010 Hb_002374_380--Hb_003442_070 Hb_002374_380--Hb_007850_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.420661 1.90675 0.343339 0.705444 0.298221 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.26233 4.72585 1.21179 3.90453 2.32059

CAGE analysis