Hb_001366_070

Information

Type transcription factor
Description TF Family: NAC
Location Contig1366: 72773-79927
Sequence    

Annotation

kegg
ID rcu:RCOM_1340960
description transcription factor, putative
nr
ID XP_012083078.1
description PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SCK6
description NAC domain-containing protein 62 OS=Arabidopsis thaliana GN=NAC062 PE=1 SV=1
trembl
ID R4NHS6
description NAC transcription factor 074 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_070 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 4-like isoform X2 [Jatropha curcas]
2 Hb_003849_270 0.2037984252 - - -
3 Hb_001493_120 0.2095462964 - - -
4 Hb_004136_030 0.2100777247 - - -
5 Hb_002042_080 0.2115905724 rubber biosynthesis Gene Name: Mevalonate kinase mevalonate kinase [Hevea brasiliensis]
6 Hb_000828_050 0.2260193017 - - unnamed protein product [Vitis vinifera]
7 Hb_001059_120 0.2278762205 - - NADH dehydrogenase, putative [Ricinus communis]
8 Hb_156182_010 0.2309581853 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
9 Hb_115940_010 0.2367144596 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
10 Hb_001823_060 0.2376602376 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
11 Hb_000252_110 0.238218197 - - -
12 Hb_000429_090 0.2387414809 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
13 Hb_000574_460 0.2393518302 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
14 Hb_000116_360 0.2396802422 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
15 Hb_021888_070 0.2462880665 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
16 Hb_006738_030 0.2485671153 - - Ras-related protein Rab7 [Morus notabilis]
17 Hb_073490_020 0.2502860479 - - hypothetical protein PRUPE_ppa016333mg, partial [Prunus persica]
18 Hb_006738_020 0.2507933523 - - hypothetical protein VITISV_010510 [Vitis vinifera]
19 Hb_001136_060 0.2580928945 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
20 Hb_147752_010 0.2602403821 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_001366_070 Hb_001366_070 Hb_003849_270 Hb_003849_270 Hb_001366_070--Hb_003849_270 Hb_001493_120 Hb_001493_120 Hb_001366_070--Hb_001493_120 Hb_004136_030 Hb_004136_030 Hb_001366_070--Hb_004136_030 Hb_002042_080 Hb_002042_080 Hb_001366_070--Hb_002042_080 Hb_000828_050 Hb_000828_050 Hb_001366_070--Hb_000828_050 Hb_001059_120 Hb_001059_120 Hb_001366_070--Hb_001059_120 Hb_000530_120 Hb_000530_120 Hb_003849_270--Hb_000530_120 Hb_000928_130 Hb_000928_130 Hb_003849_270--Hb_000928_130 Hb_003050_280 Hb_003050_280 Hb_003849_270--Hb_003050_280 Hb_006738_030 Hb_006738_030 Hb_003849_270--Hb_006738_030 Hb_000318_160 Hb_000318_160 Hb_003849_270--Hb_000318_160 Hb_003777_040 Hb_003777_040 Hb_003849_270--Hb_003777_040 Hb_000574_460 Hb_000574_460 Hb_001493_120--Hb_000574_460 Hb_000429_090 Hb_000429_090 Hb_001493_120--Hb_000429_090 Hb_002809_150 Hb_002809_150 Hb_001493_120--Hb_002809_150 Hb_091194_010 Hb_091194_010 Hb_001493_120--Hb_091194_010 Hb_001136_060 Hb_001136_060 Hb_001493_120--Hb_001136_060 Hb_001284_010 Hb_001284_010 Hb_001493_120--Hb_001284_010 Hb_004136_030--Hb_000828_050 Hb_000252_110 Hb_000252_110 Hb_004136_030--Hb_000252_110 Hb_004453_080 Hb_004453_080 Hb_004136_030--Hb_004453_080 Hb_001433_110 Hb_001433_110 Hb_004136_030--Hb_001433_110 Hb_002374_380 Hb_002374_380 Hb_004136_030--Hb_002374_380 Hb_002042_080--Hb_001059_120 Hb_000178_120 Hb_000178_120 Hb_002042_080--Hb_000178_120 Hb_147752_010 Hb_147752_010 Hb_002042_080--Hb_147752_010 Hb_002243_060 Hb_002243_060 Hb_002042_080--Hb_002243_060 Hb_007441_260 Hb_007441_260 Hb_002042_080--Hb_007441_260 Hb_001240_020 Hb_001240_020 Hb_002042_080--Hb_001240_020 Hb_000172_190 Hb_000172_190 Hb_000828_050--Hb_000172_190 Hb_000828_050--Hb_000252_110 Hb_007199_010 Hb_007199_010 Hb_000828_050--Hb_007199_010 Hb_001621_010 Hb_001621_010 Hb_000828_050--Hb_001621_010 Hb_015690_010 Hb_015690_010 Hb_000828_050--Hb_015690_010 Hb_001059_120--Hb_001433_110 Hb_001059_120--Hb_147752_010 Hb_004679_060 Hb_004679_060 Hb_001059_120--Hb_004679_060 Hb_007313_080 Hb_007313_080 Hb_001059_120--Hb_007313_080 Hb_000270_740 Hb_000270_740 Hb_001059_120--Hb_000270_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.298499 0.359912 0.306727 0.0737123 0.0242555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18516 2.3232 0.524731 0.926728 1.75317

CAGE analysis