Hb_000675_060

Information

Type -
Description -
Location Contig675: 133259-135297
Sequence    

Annotation

kegg
ID rcu:RCOM_0707140
description cytochrome P450, putative (EC:1.3.3.9)
nr
ID XP_002516130.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID H2DH21
description Cytochrome P450 CYP72A219 OS=Panax ginseng PE=2 SV=1
trembl
ID B9RQW1
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0707140 PE=3 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 cyp72a219-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53528: 133329-133810 , PASA_asmbl_53529: 133990-134419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000675_060 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_158092_060 0.1795215491 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
3 Hb_000061_090 0.2272408852 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
4 Hb_001004_100 0.2287152237 - - ATP binding protein, putative [Ricinus communis]
5 Hb_003947_040 0.2302394017 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
6 Hb_002471_260 0.2410700231 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
7 Hb_003592_030 0.2445318035 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
8 Hb_007439_010 0.2512812895 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
9 Hb_107201_010 0.2525975587 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_000116_590 0.2639589428 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
11 Hb_000471_080 0.2652962176 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
12 Hb_026527_020 0.269160008 - - PREDICTED: putative methyltransferase DDB_G0268948 [Jatropha curcas]
13 Hb_005545_040 0.2721883326 - - PREDICTED: protein LURP-one-related 14 isoform X2 [Nelumbo nucifera]
14 Hb_019253_010 0.275041069 - - DNA-binding family protein [Populus trichocarpa]
15 Hb_002233_040 0.2759003259 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
16 Hb_074506_010 0.2779292129 - - JHL25H03.10 [Jatropha curcas]
17 Hb_000975_150 0.2807094259 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
18 Hb_000011_290 0.2808292718 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
19 Hb_001776_190 0.2827250371 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
20 Hb_009545_010 0.283859701 transcription factor TF Family: GNAT Acetyltransferase [Medicago truncatula]

Gene co-expression network

sample Hb_000675_060 Hb_000675_060 Hb_158092_060 Hb_158092_060 Hb_000675_060--Hb_158092_060 Hb_000061_090 Hb_000061_090 Hb_000675_060--Hb_000061_090 Hb_001004_100 Hb_001004_100 Hb_000675_060--Hb_001004_100 Hb_003947_040 Hb_003947_040 Hb_000675_060--Hb_003947_040 Hb_002471_260 Hb_002471_260 Hb_000675_060--Hb_002471_260 Hb_003592_030 Hb_003592_030 Hb_000675_060--Hb_003592_030 Hb_158092_060--Hb_001004_100 Hb_000471_080 Hb_000471_080 Hb_158092_060--Hb_000471_080 Hb_000922_010 Hb_000922_010 Hb_158092_060--Hb_000922_010 Hb_009545_010 Hb_009545_010 Hb_158092_060--Hb_009545_010 Hb_158092_060--Hb_002471_260 Hb_000414_110 Hb_000414_110 Hb_000061_090--Hb_000414_110 Hb_000879_190 Hb_000879_190 Hb_000061_090--Hb_000879_190 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_000011_290 Hb_000011_290 Hb_000061_090--Hb_000011_290 Hb_000061_090--Hb_003947_040 Hb_002539_020 Hb_002539_020 Hb_000061_090--Hb_002539_020 Hb_001123_010 Hb_001123_010 Hb_001004_100--Hb_001123_010 Hb_012753_190 Hb_012753_190 Hb_001004_100--Hb_012753_190 Hb_029904_010 Hb_029904_010 Hb_001004_100--Hb_029904_010 Hb_002849_150 Hb_002849_150 Hb_001004_100--Hb_002849_150 Hb_000653_010 Hb_000653_010 Hb_001004_100--Hb_000653_010 Hb_000172_190 Hb_000172_190 Hb_003947_040--Hb_000172_190 Hb_003947_040--Hb_000879_190 Hb_000828_050 Hb_000828_050 Hb_003947_040--Hb_000828_050 Hb_001699_200 Hb_001699_200 Hb_003947_040--Hb_001699_200 Hb_028872_150 Hb_028872_150 Hb_002471_260--Hb_028872_150 Hb_029921_030 Hb_029921_030 Hb_002471_260--Hb_029921_030 Hb_003972_060 Hb_003972_060 Hb_002471_260--Hb_003972_060 Hb_002539_010 Hb_002539_010 Hb_002471_260--Hb_002539_010 Hb_011633_040 Hb_011633_040 Hb_002471_260--Hb_011633_040 Hb_021409_140 Hb_021409_140 Hb_002471_260--Hb_021409_140 Hb_002835_340 Hb_002835_340 Hb_003592_030--Hb_002835_340 Hb_000116_590 Hb_000116_590 Hb_003592_030--Hb_000116_590 Hb_030982_060 Hb_030982_060 Hb_003592_030--Hb_030982_060 Hb_009736_010 Hb_009736_010 Hb_003592_030--Hb_009736_010 Hb_001439_110 Hb_001439_110 Hb_003592_030--Hb_001439_110 Hb_004724_450 Hb_004724_450 Hb_003592_030--Hb_004724_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0126141 0.0480629 0.0380305 0.287502 0 0.0124877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0861494 0.542229 0.085123 1.65775 0.284425

CAGE analysis