Hb_000286_200

Information

Type desease resistance
Description Gene Name: TIR
Location Contig286: 171762-175505
Sequence    

Annotation

kegg
ID rcu:RCOM_0740720
description leucine-rich repeat-containing protein, putative
nr
ID XP_012071295.1
description PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067L5B8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00225 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29880: 173316-173548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000286_200 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
2 Hb_000510_240 0.1109461352 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
3 Hb_000227_070 0.1159237119 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
4 Hb_000012_410 0.1424977811 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
5 Hb_010815_020 0.1426457864 - - unnamed protein product [Vitis vinifera]
6 Hb_000286_060 0.1426589482 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
7 Hb_001452_210 0.1433208333 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
8 Hb_004897_010 0.1436920922 - - -
9 Hb_052764_110 0.1518093056 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
10 Hb_016522_010 0.1537149175 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
11 Hb_002131_030 0.1549823425 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
12 Hb_179924_010 0.156406634 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
13 Hb_000031_260 0.1568951841 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
14 Hb_000631_070 0.1606377909 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
15 Hb_007383_020 0.1629486954 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010174_150 0.1651504481 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_003098_080 0.1677100216 - - -
18 Hb_094970_010 0.1685942101 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
19 Hb_000187_040 0.1687046902 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
20 Hb_000197_220 0.1699754916 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000286_200 Hb_000286_200 Hb_000510_240 Hb_000510_240 Hb_000286_200--Hb_000510_240 Hb_000227_070 Hb_000227_070 Hb_000286_200--Hb_000227_070 Hb_000012_410 Hb_000012_410 Hb_000286_200--Hb_000012_410 Hb_010815_020 Hb_010815_020 Hb_000286_200--Hb_010815_020 Hb_000286_060 Hb_000286_060 Hb_000286_200--Hb_000286_060 Hb_001452_210 Hb_001452_210 Hb_000286_200--Hb_001452_210 Hb_000510_240--Hb_000227_070 Hb_016522_010 Hb_016522_010 Hb_000510_240--Hb_016522_010 Hb_000210_120 Hb_000210_120 Hb_000510_240--Hb_000210_120 Hb_002193_030 Hb_002193_030 Hb_000510_240--Hb_002193_030 Hb_000103_270 Hb_000103_270 Hb_000510_240--Hb_000103_270 Hb_005914_170 Hb_005914_170 Hb_000510_240--Hb_005914_170 Hb_000227_070--Hb_016522_010 Hb_010174_150 Hb_010174_150 Hb_000227_070--Hb_010174_150 Hb_001085_240 Hb_001085_240 Hb_000227_070--Hb_001085_240 Hb_000096_160 Hb_000096_160 Hb_000227_070--Hb_000096_160 Hb_179924_010 Hb_179924_010 Hb_000227_070--Hb_179924_010 Hb_000012_410--Hb_010174_150 Hb_000012_410--Hb_000227_070 Hb_000159_120 Hb_000159_120 Hb_000012_410--Hb_000159_120 Hb_000012_410--Hb_016522_010 Hb_004880_150 Hb_004880_150 Hb_000012_410--Hb_004880_150 Hb_002534_120 Hb_002534_120 Hb_000012_410--Hb_002534_120 Hb_004897_010 Hb_004897_010 Hb_010815_020--Hb_004897_010 Hb_004870_040 Hb_004870_040 Hb_010815_020--Hb_004870_040 Hb_003098_080 Hb_003098_080 Hb_010815_020--Hb_003098_080 Hb_000172_190 Hb_000172_190 Hb_010815_020--Hb_000172_190 Hb_012022_050 Hb_012022_050 Hb_010815_020--Hb_012022_050 Hb_010560_050 Hb_010560_050 Hb_000286_060--Hb_010560_050 Hb_000286_060--Hb_001085_240 Hb_001332_040 Hb_001332_040 Hb_000286_060--Hb_001332_040 Hb_000286_060--Hb_000227_070 Hb_003633_050 Hb_003633_050 Hb_000286_060--Hb_003633_050 Hb_000286_060--Hb_000096_160 Hb_052764_110 Hb_052764_110 Hb_001452_210--Hb_052764_110 Hb_098315_080 Hb_098315_080 Hb_001452_210--Hb_098315_080 Hb_001452_210--Hb_000227_070 Hb_001452_210--Hb_179924_010 Hb_001452_210--Hb_003098_080 Hb_001221_340 Hb_001221_340 Hb_001452_210--Hb_001221_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.204424 0.17117 0.15194 0.521685 0.228611 0.208977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.600322 0.679805 0.264452 1.31622 0.860287

CAGE analysis