Hb_007054_050

Information

Type -
Description -
Location Contig7054: 53044-60221
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007054_050 0.0 - - -
2 Hb_000460_070 0.1839670284 - - luminal binding protein [Gossypium hirsutum]
3 Hb_002360_030 0.1927312476 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
4 Hb_008698_010 0.2069396197 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_000683_080 0.2102985868 - - hypothetical protein EUGRSUZ_G013602, partial [Eucalyptus grandis]
6 Hb_000122_210 0.2127763309 - - -
7 Hb_004218_260 0.213407544 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
8 Hb_131872_010 0.2182088098 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000120_040 0.2191001243 - - -
10 Hb_002226_050 0.2223499499 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
11 Hb_003124_110 0.222370516 - - hypothetical protein VITISV_026680 [Vitis vinifera]
12 Hb_003186_040 0.2230687268 - - PREDICTED: protein DENND6A [Jatropha curcas]
13 Hb_001229_020 0.2311102695 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_000012_160 0.2317641663 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
15 Hb_003211_030 0.232103876 - - -
16 Hb_003544_010 0.2359563988 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_002534_030 0.237142668 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
18 Hb_000203_140 0.2376012376 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
19 Hb_001214_180 0.2412419573 - - -
20 Hb_183612_070 0.2421875286 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_007054_050 Hb_007054_050 Hb_000460_070 Hb_000460_070 Hb_007054_050--Hb_000460_070 Hb_002360_030 Hb_002360_030 Hb_007054_050--Hb_002360_030 Hb_008698_010 Hb_008698_010 Hb_007054_050--Hb_008698_010 Hb_000683_080 Hb_000683_080 Hb_007054_050--Hb_000683_080 Hb_000122_210 Hb_000122_210 Hb_007054_050--Hb_000122_210 Hb_004218_260 Hb_004218_260 Hb_007054_050--Hb_004218_260 Hb_000460_070--Hb_008698_010 Hb_001229_020 Hb_001229_020 Hb_000460_070--Hb_001229_020 Hb_000460_070--Hb_000683_080 Hb_001621_060 Hb_001621_060 Hb_000460_070--Hb_001621_060 Hb_000189_520 Hb_000189_520 Hb_000460_070--Hb_000189_520 Hb_140459_010 Hb_140459_010 Hb_002360_030--Hb_140459_010 Hb_005227_040 Hb_005227_040 Hb_002360_030--Hb_005227_040 Hb_003124_110 Hb_003124_110 Hb_002360_030--Hb_003124_110 Hb_003186_040 Hb_003186_040 Hb_002360_030--Hb_003186_040 Hb_003211_030 Hb_003211_030 Hb_002360_030--Hb_003211_030 Hb_008698_010--Hb_001621_060 Hb_002534_030 Hb_002534_030 Hb_008698_010--Hb_002534_030 Hb_001792_030 Hb_001792_030 Hb_008698_010--Hb_001792_030 Hb_008698_010--Hb_001229_020 Hb_002078_300 Hb_002078_300 Hb_008698_010--Hb_002078_300 Hb_007002_010 Hb_007002_010 Hb_000683_080--Hb_007002_010 Hb_000495_080 Hb_000495_080 Hb_000683_080--Hb_000495_080 Hb_000352_220 Hb_000352_220 Hb_000683_080--Hb_000352_220 Hb_000890_110 Hb_000890_110 Hb_000683_080--Hb_000890_110 Hb_003226_190 Hb_003226_190 Hb_000683_080--Hb_003226_190 Hb_000683_080--Hb_000189_520 Hb_000283_080 Hb_000283_080 Hb_000122_210--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000122_210--Hb_007747_210 Hb_000120_040 Hb_000120_040 Hb_000122_210--Hb_000120_040 Hb_006420_050 Hb_006420_050 Hb_000122_210--Hb_006420_050 Hb_042202_030 Hb_042202_030 Hb_000122_210--Hb_042202_030 Hb_002338_050 Hb_002338_050 Hb_000122_210--Hb_002338_050 Hb_052764_100 Hb_052764_100 Hb_004218_260--Hb_052764_100 Hb_004218_260--Hb_000683_080 Hb_004218_260--Hb_000460_070 Hb_000184_030 Hb_000184_030 Hb_004218_260--Hb_000184_030 Hb_000014_190 Hb_000014_190 Hb_004218_260--Hb_000014_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268044 0.416953 0.116979 0.147425 0.109529 0.0675002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439473 0.690903 0.856919 0.958387 2.98331

CAGE analysis