Hb_002360_030

Information

Type -
Description -
Location Contig2360: 45446-46481
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID XP_011659859.1
description PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A5AYU6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008903 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105436302

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002360_030 0.0 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
2 Hb_140459_010 0.1732532241 - - thioredoxin f-type, putative [Ricinus communis]
3 Hb_005227_040 0.1879397828 transcription factor TF Family: HB unnamed protein product [Vitis vinifera]
4 Hb_003124_110 0.191036556 - - hypothetical protein VITISV_026680 [Vitis vinifera]
5 Hb_007054_050 0.1927312476 - - -
6 Hb_003186_040 0.1928697626 - - PREDICTED: protein DENND6A [Jatropha curcas]
7 Hb_003211_030 0.1937478062 - - -
8 Hb_009615_120 0.19660679 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
9 Hb_000001_130 0.1972359332 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
10 Hb_183612_070 0.2013704092 - - unnamed protein product [Vitis vinifera]
11 Hb_000460_070 0.2054746046 - - luminal binding protein [Gossypium hirsutum]
12 Hb_024468_010 0.2125032443 - - hypothetical protein CISIN_1g046520mg [Citrus sinensis]
13 Hb_063405_020 0.2136491188 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
14 Hb_011310_080 0.2146268773 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
15 Hb_000139_340 0.2180876302 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001138_060 0.2186698383 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
17 Hb_000203_140 0.2196926519 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
18 Hb_001723_060 0.2215445153 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
19 Hb_002226_050 0.2216868165 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
20 Hb_012404_080 0.2218919623 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]

Gene co-expression network

sample Hb_002360_030 Hb_002360_030 Hb_140459_010 Hb_140459_010 Hb_002360_030--Hb_140459_010 Hb_005227_040 Hb_005227_040 Hb_002360_030--Hb_005227_040 Hb_003124_110 Hb_003124_110 Hb_002360_030--Hb_003124_110 Hb_007054_050 Hb_007054_050 Hb_002360_030--Hb_007054_050 Hb_003186_040 Hb_003186_040 Hb_002360_030--Hb_003186_040 Hb_003211_030 Hb_003211_030 Hb_002360_030--Hb_003211_030 Hb_183612_070 Hb_183612_070 Hb_140459_010--Hb_183612_070 Hb_020378_060 Hb_020378_060 Hb_140459_010--Hb_020378_060 Hb_001138_060 Hb_001138_060 Hb_140459_010--Hb_001138_060 Hb_002475_140 Hb_002475_140 Hb_140459_010--Hb_002475_140 Hb_140459_010--Hb_003211_030 Hb_001863_020 Hb_001863_020 Hb_140459_010--Hb_001863_020 Hb_000001_130 Hb_000001_130 Hb_005227_040--Hb_000001_130 Hb_001604_150 Hb_001604_150 Hb_005227_040--Hb_001604_150 Hb_011609_090 Hb_011609_090 Hb_005227_040--Hb_011609_090 Hb_002235_100 Hb_002235_100 Hb_005227_040--Hb_002235_100 Hb_000920_130 Hb_000920_130 Hb_005227_040--Hb_000920_130 Hb_000035_350 Hb_000035_350 Hb_005227_040--Hb_000035_350 Hb_000500_050 Hb_000500_050 Hb_003124_110--Hb_000500_050 Hb_003124_110--Hb_183612_070 Hb_000032_400 Hb_000032_400 Hb_003124_110--Hb_000032_400 Hb_009150_030 Hb_009150_030 Hb_003124_110--Hb_009150_030 Hb_001229_020 Hb_001229_020 Hb_003124_110--Hb_001229_020 Hb_003124_110--Hb_140459_010 Hb_000460_070 Hb_000460_070 Hb_007054_050--Hb_000460_070 Hb_008698_010 Hb_008698_010 Hb_007054_050--Hb_008698_010 Hb_000683_080 Hb_000683_080 Hb_007054_050--Hb_000683_080 Hb_000122_210 Hb_000122_210 Hb_007054_050--Hb_000122_210 Hb_004218_260 Hb_004218_260 Hb_007054_050--Hb_004218_260 Hb_000022_140 Hb_000022_140 Hb_003186_040--Hb_000022_140 Hb_001085_210 Hb_001085_210 Hb_003186_040--Hb_001085_210 Hb_008803_040 Hb_008803_040 Hb_003186_040--Hb_008803_040 Hb_000058_080 Hb_000058_080 Hb_003186_040--Hb_000058_080 Hb_002811_190 Hb_002811_190 Hb_003186_040--Hb_002811_190 Hb_002226_050 Hb_002226_050 Hb_003186_040--Hb_002226_050 Hb_000392_160 Hb_000392_160 Hb_003211_030--Hb_000392_160 Hb_000309_050 Hb_000309_050 Hb_003211_030--Hb_000309_050 Hb_000183_030 Hb_000183_030 Hb_003211_030--Hb_000183_030 Hb_002611_010 Hb_002611_010 Hb_003211_030--Hb_002611_010 Hb_003211_030--Hb_001138_060 Hb_000656_310 Hb_000656_310 Hb_003211_030--Hb_000656_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0769808 0.385192 0.151047 0.266436 0 0.101735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.453263 0.277271 0.510522 0.637085 1.37805

CAGE analysis