Hb_001085_210

Information

Type -
Description -
Location Contig1085: 152080-158640
Sequence    

Annotation

kegg
ID rcu:RCOM_1019780
description hypothetical protein
nr
ID XP_012071270.1
description PREDICTED: myosin-binding protein 3 [Jatropha curcas]
swissprot
ID Q0WNW4
description Myosin-binding protein 3 OS=Arabidopsis thaliana GN=MYOB3 PE=1 SV=1
trembl
ID A0A067L4E3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01127 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02585: 151456-152108 , PASA_asmbl_02586: 152455-152846 , PASA_asmbl_02587: 153069-154368 , PASA_asmbl_02588: 153069-154368 , PASA_asmbl_02589: 154608-155234 , PASA_asmbl_02590: 156660-156786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001085_210 0.0 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
2 Hb_185058_020 0.1732477735 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
3 Hb_013691_050 0.1750740131 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
4 Hb_003186_040 0.1775350988 - - PREDICTED: protein DENND6A [Jatropha curcas]
5 Hb_001096_020 0.2142548696 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
6 Hb_069147_010 0.2247337245 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
7 Hb_142570_010 0.2410844873 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
8 Hb_001001_110 0.241526179 - - -
9 Hb_014324_010 0.2450370452 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
10 Hb_007037_010 0.2473123076 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
11 Hb_001188_120 0.250374684 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
12 Hb_021854_020 0.2508148716 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
13 Hb_009848_050 0.2522814633 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
14 Hb_001811_080 0.2523727174 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
15 Hb_041813_050 0.2538860937 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
16 Hb_057638_010 0.2562000608 - - PREDICTED: uncharacterized protein LOC105637008 [Jatropha curcas]
17 Hb_009848_060 0.2575728179 - - unknown [Glycine max]
18 Hb_004218_300 0.2596518848 - - hypothetical protein JCGZ_24534 [Jatropha curcas]
19 Hb_012092_080 0.2598461191 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
20 Hb_008803_040 0.2612197372 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]

Gene co-expression network

sample Hb_001085_210 Hb_001085_210 Hb_185058_020 Hb_185058_020 Hb_001085_210--Hb_185058_020 Hb_013691_050 Hb_013691_050 Hb_001085_210--Hb_013691_050 Hb_003186_040 Hb_003186_040 Hb_001085_210--Hb_003186_040 Hb_001096_020 Hb_001096_020 Hb_001085_210--Hb_001096_020 Hb_069147_010 Hb_069147_010 Hb_001085_210--Hb_069147_010 Hb_142570_010 Hb_142570_010 Hb_001085_210--Hb_142570_010 Hb_009848_050 Hb_009848_050 Hb_185058_020--Hb_009848_050 Hb_007037_010 Hb_007037_010 Hb_185058_020--Hb_007037_010 Hb_041813_050 Hb_041813_050 Hb_185058_020--Hb_041813_050 Hb_009848_060 Hb_009848_060 Hb_185058_020--Hb_009848_060 Hb_185058_020--Hb_069147_010 Hb_001001_110 Hb_001001_110 Hb_013691_050--Hb_001001_110 Hb_013691_050--Hb_001096_020 Hb_020437_020 Hb_020437_020 Hb_013691_050--Hb_020437_020 Hb_021854_020 Hb_021854_020 Hb_013691_050--Hb_021854_020 Hb_000032_460 Hb_000032_460 Hb_013691_050--Hb_000032_460 Hb_000022_140 Hb_000022_140 Hb_003186_040--Hb_000022_140 Hb_008803_040 Hb_008803_040 Hb_003186_040--Hb_008803_040 Hb_000058_080 Hb_000058_080 Hb_003186_040--Hb_000058_080 Hb_002811_190 Hb_002811_190 Hb_003186_040--Hb_002811_190 Hb_002226_050 Hb_002226_050 Hb_003186_040--Hb_002226_050 Hb_008033_060 Hb_008033_060 Hb_001096_020--Hb_008033_060 Hb_014324_010 Hb_014324_010 Hb_001096_020--Hb_014324_010 Hb_001096_020--Hb_021854_020 Hb_001141_040 Hb_001141_040 Hb_001096_020--Hb_001141_040 Hb_000054_110 Hb_000054_110 Hb_001096_020--Hb_000054_110 Hb_004052_060 Hb_004052_060 Hb_069147_010--Hb_004052_060 Hb_069147_010--Hb_009848_060 Hb_000414_180 Hb_000414_180 Hb_069147_010--Hb_000414_180 Hb_069147_010--Hb_041813_050 Hb_044380_020 Hb_044380_020 Hb_069147_010--Hb_044380_020 Hb_002473_140 Hb_002473_140 Hb_142570_010--Hb_002473_140 Hb_159938_010 Hb_159938_010 Hb_142570_010--Hb_159938_010 Hb_142570_010--Hb_041813_050 Hb_001519_210 Hb_001519_210 Hb_142570_010--Hb_001519_210 Hb_088410_010 Hb_088410_010 Hb_142570_010--Hb_088410_010 Hb_043792_020 Hb_043792_020 Hb_142570_010--Hb_043792_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00934616 0.0484289 0.322655 0.103089 0 0.0551609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0211705 0.0249909 0.416088 0.729103 1.21426

CAGE analysis