Hb_000054_110

Information

Type -
Description -
Location Contig54: 186345-186828
Sequence    

Annotation

kegg
ID csv:101208251
description uncharacterized LOC101208251
nr
ID XP_011462056.1
description PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID M5W638
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016339mg PE=4 SV=1
Gene Ontology
ID GO:0016491
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000054_110 0.0 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
2 Hb_012753_010 0.161974053 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_003097_050 0.1884139015 - - hypothetical protein POPTR_0007s07150g [Populus trichocarpa]
4 Hb_005214_080 0.2046708413 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001780_130 0.2075873587 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
6 Hb_005731_150 0.211777582 - - PREDICTED: uncharacterized protein LOC105630360 [Jatropha curcas]
7 Hb_001096_020 0.2145110659 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
8 Hb_021854_020 0.2159513604 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
9 Hb_007130_010 0.2279348631 - - -
10 Hb_046998_010 0.2322795636 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
11 Hb_010490_060 0.2378754557 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
12 Hb_185058_020 0.2406141755 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
13 Hb_002863_080 0.250173332 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
14 Hb_009848_050 0.2565637808 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
15 Hb_001141_040 0.2576066097 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
16 Hb_014324_010 0.2599637206 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
17 Hb_008033_060 0.261325507 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
18 Hb_005511_090 0.2630151666 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
19 Hb_000137_060 0.2711641653 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
20 Hb_004800_220 0.275207062 - - PREDICTED: random slug protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000054_110 Hb_000054_110 Hb_012753_010 Hb_012753_010 Hb_000054_110--Hb_012753_010 Hb_003097_050 Hb_003097_050 Hb_000054_110--Hb_003097_050 Hb_005214_080 Hb_005214_080 Hb_000054_110--Hb_005214_080 Hb_001780_130 Hb_001780_130 Hb_000054_110--Hb_001780_130 Hb_005731_150 Hb_005731_150 Hb_000054_110--Hb_005731_150 Hb_001096_020 Hb_001096_020 Hb_000054_110--Hb_001096_020 Hb_005511_090 Hb_005511_090 Hb_012753_010--Hb_005511_090 Hb_185058_020 Hb_185058_020 Hb_012753_010--Hb_185058_020 Hb_001188_120 Hb_001188_120 Hb_012753_010--Hb_001188_120 Hb_012753_010--Hb_005731_150 Hb_021854_020 Hb_021854_020 Hb_012753_010--Hb_021854_020 Hb_167977_010 Hb_167977_010 Hb_003097_050--Hb_167977_010 Hb_004505_030 Hb_004505_030 Hb_003097_050--Hb_004505_030 Hb_006736_010 Hb_006736_010 Hb_003097_050--Hb_006736_010 Hb_003349_100 Hb_003349_100 Hb_003097_050--Hb_003349_100 Hb_000141_010 Hb_000141_010 Hb_003097_050--Hb_000141_010 Hb_046998_010 Hb_046998_010 Hb_005214_080--Hb_046998_010 Hb_001141_040 Hb_001141_040 Hb_005214_080--Hb_001141_040 Hb_002888_060 Hb_002888_060 Hb_005214_080--Hb_002888_060 Hb_011853_010 Hb_011853_010 Hb_005214_080--Hb_011853_010 Hb_007951_070 Hb_007951_070 Hb_005214_080--Hb_007951_070 Hb_000445_030 Hb_000445_030 Hb_005214_080--Hb_000445_030 Hb_000473_030 Hb_000473_030 Hb_001780_130--Hb_000473_030 Hb_000330_150 Hb_000330_150 Hb_001780_130--Hb_000330_150 Hb_011360_060 Hb_011360_060 Hb_001780_130--Hb_011360_060 Hb_001780_130--Hb_011853_010 Hb_001780_130--Hb_046998_010 Hb_000173_260 Hb_000173_260 Hb_001780_130--Hb_000173_260 Hb_005731_150--Hb_005214_080 Hb_000649_180 Hb_000649_180 Hb_005731_150--Hb_000649_180 Hb_005731_150--Hb_003097_050 Hb_005731_150--Hb_001780_130 Hb_008033_060 Hb_008033_060 Hb_001096_020--Hb_008033_060 Hb_014324_010 Hb_014324_010 Hb_001096_020--Hb_014324_010 Hb_001096_020--Hb_021854_020 Hb_001096_020--Hb_001141_040 Hb_001085_210 Hb_001085_210 Hb_001096_020--Hb_001085_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.239396 0.32267 0.118903 0.226194 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.239897 0.950689 0.790903

CAGE analysis