Hb_003349_100

Information

Type -
Description -
Location Contig3349: 118401-126629
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003349_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003206_080 0.1757049508 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
3 Hb_003097_050 0.2457175813 - - hypothetical protein POPTR_0007s07150g [Populus trichocarpa]
4 Hb_005731_150 0.2783971251 - - PREDICTED: uncharacterized protein LOC105630360 [Jatropha curcas]
5 Hb_000640_030 0.2851197967 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
6 Hb_005511_090 0.301033851 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
7 Hb_012753_010 0.3027559344 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_011986_010 0.3052774218 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000054_110 0.3090545912 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
10 Hb_000475_050 0.3162212665 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_001188_120 0.3217077399 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
12 Hb_035687_010 0.3258839995 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_004505_030 0.3291556071 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
14 Hb_000840_040 0.3319418237 - - monoxygenase, putative [Ricinus communis]
15 Hb_001114_040 0.3395950881 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
16 Hb_013080_010 0.3448517661 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_001079_070 0.3576444219 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
18 Hb_005896_010 0.3588643679 - - -
19 Hb_003406_030 0.3590439885 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
20 Hb_146339_010 0.3593164435 - - hypothetical protein JCGZ_01613 [Jatropha curcas]

Gene co-expression network

sample Hb_003349_100 Hb_003349_100 Hb_003206_080 Hb_003206_080 Hb_003349_100--Hb_003206_080 Hb_003097_050 Hb_003097_050 Hb_003349_100--Hb_003097_050 Hb_005731_150 Hb_005731_150 Hb_003349_100--Hb_005731_150 Hb_000640_030 Hb_000640_030 Hb_003349_100--Hb_000640_030 Hb_005511_090 Hb_005511_090 Hb_003349_100--Hb_005511_090 Hb_012753_010 Hb_012753_010 Hb_003349_100--Hb_012753_010 Hb_005896_010 Hb_005896_010 Hb_003206_080--Hb_005896_010 Hb_003206_080--Hb_003097_050 Hb_035687_010 Hb_035687_010 Hb_003206_080--Hb_035687_010 Hb_038044_020 Hb_038044_020 Hb_003206_080--Hb_038044_020 Hb_001221_370 Hb_001221_370 Hb_003206_080--Hb_001221_370 Hb_000054_110 Hb_000054_110 Hb_003097_050--Hb_000054_110 Hb_167977_010 Hb_167977_010 Hb_003097_050--Hb_167977_010 Hb_004505_030 Hb_004505_030 Hb_003097_050--Hb_004505_030 Hb_006736_010 Hb_006736_010 Hb_003097_050--Hb_006736_010 Hb_000141_010 Hb_000141_010 Hb_003097_050--Hb_000141_010 Hb_005731_150--Hb_000054_110 Hb_005214_080 Hb_005214_080 Hb_005731_150--Hb_005214_080 Hb_005731_150--Hb_012753_010 Hb_000649_180 Hb_000649_180 Hb_005731_150--Hb_000649_180 Hb_005731_150--Hb_003097_050 Hb_001780_130 Hb_001780_130 Hb_005731_150--Hb_001780_130 Hb_000827_060 Hb_000827_060 Hb_000640_030--Hb_000827_060 Hb_006569_050 Hb_006569_050 Hb_000640_030--Hb_006569_050 Hb_001916_070 Hb_001916_070 Hb_000640_030--Hb_001916_070 Hb_000404_040 Hb_000404_040 Hb_000640_030--Hb_000404_040 Hb_026698_030 Hb_026698_030 Hb_000640_030--Hb_026698_030 Hb_010998_020 Hb_010998_020 Hb_000640_030--Hb_010998_020 Hb_005511_090--Hb_012753_010 Hb_000608_200 Hb_000608_200 Hb_005511_090--Hb_000608_200 Hb_015978_050 Hb_015978_050 Hb_005511_090--Hb_015978_050 Hb_005511_090--Hb_000054_110 Hb_005511_090--Hb_005731_150 Hb_000236_450 Hb_000236_450 Hb_005511_090--Hb_000236_450 Hb_012753_010--Hb_000054_110 Hb_185058_020 Hb_185058_020 Hb_012753_010--Hb_185058_020 Hb_001188_120 Hb_001188_120 Hb_012753_010--Hb_001188_120 Hb_021854_020 Hb_021854_020 Hb_012753_010--Hb_021854_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0887135 0.0180839 0 0.0467974 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0796513 0.0700691 0.0884896

CAGE analysis