Hb_021854_020

Information

Type -
Description -
Location Contig21854: 4784-11560
Sequence    

Annotation

kegg
ID pop:POPTR_1763s00200g
description hypothetical protein
nr
ID XP_006387127.1
description hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DYW7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_1763s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22525: 5318-5849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021854_020 0.0 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
2 Hb_021854_010 0.1535460659 - - -
3 Hb_113119_010 0.1545620953 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_001310_050 0.1828584683 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
5 Hb_010068_050 0.1896785553 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
6 Hb_006594_080 0.1910194184 - - beta-glucosidase, putative [Ricinus communis]
7 Hb_008033_060 0.1933770031 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
8 Hb_007130_010 0.199442052 - - -
9 Hb_000313_230 0.2036620727 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
10 Hb_008066_080 0.2064295251 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
11 Hb_005214_080 0.2077690106 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001096_020 0.2083402561 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
13 Hb_001141_040 0.2088609707 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
14 Hb_001780_130 0.2103754293 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
15 Hb_001365_010 0.212150272 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
16 Hb_185058_020 0.2122529268 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
17 Hb_005288_060 0.2153264634 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
18 Hb_000054_110 0.2159513604 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
19 Hb_062013_010 0.2203832227 - - phosphoprotein phosphatase, putative [Ricinus communis]
20 Hb_000473_030 0.2208412508 - - hypothetical protein JCGZ_19297 [Jatropha curcas]

Gene co-expression network

sample Hb_021854_020 Hb_021854_020 Hb_021854_010 Hb_021854_010 Hb_021854_020--Hb_021854_010 Hb_113119_010 Hb_113119_010 Hb_021854_020--Hb_113119_010 Hb_001310_050 Hb_001310_050 Hb_021854_020--Hb_001310_050 Hb_010068_050 Hb_010068_050 Hb_021854_020--Hb_010068_050 Hb_006594_080 Hb_006594_080 Hb_021854_020--Hb_006594_080 Hb_008033_060 Hb_008033_060 Hb_021854_020--Hb_008033_060 Hb_021854_010--Hb_113119_010 Hb_021854_010--Hb_001310_050 Hb_001365_010 Hb_001365_010 Hb_021854_010--Hb_001365_010 Hb_001894_010 Hb_001894_010 Hb_021854_010--Hb_001894_010 Hb_005181_060 Hb_005181_060 Hb_021854_010--Hb_005181_060 Hb_000120_740 Hb_000120_740 Hb_113119_010--Hb_000120_740 Hb_113119_010--Hb_001894_010 Hb_000042_380 Hb_000042_380 Hb_113119_010--Hb_000042_380 Hb_005588_100 Hb_005588_100 Hb_113119_010--Hb_005588_100 Hb_000313_230 Hb_000313_230 Hb_001310_050--Hb_000313_230 Hb_002518_180 Hb_002518_180 Hb_001310_050--Hb_002518_180 Hb_003783_050 Hb_003783_050 Hb_001310_050--Hb_003783_050 Hb_030312_030 Hb_030312_030 Hb_001310_050--Hb_030312_030 Hb_036388_010 Hb_036388_010 Hb_001310_050--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_001310_050--Hb_004326_010 Hb_005288_060 Hb_005288_060 Hb_010068_050--Hb_005288_060 Hb_000414_180 Hb_000414_180 Hb_010068_050--Hb_000414_180 Hb_007130_010 Hb_007130_010 Hb_010068_050--Hb_007130_010 Hb_172939_010 Hb_172939_010 Hb_010068_050--Hb_172939_010 Hb_010068_050--Hb_006594_080 Hb_000875_070 Hb_000875_070 Hb_010068_050--Hb_000875_070 Hb_005332_050 Hb_005332_050 Hb_006594_080--Hb_005332_050 Hb_003992_220 Hb_003992_220 Hb_006594_080--Hb_003992_220 Hb_167211_010 Hb_167211_010 Hb_006594_080--Hb_167211_010 Hb_000442_170 Hb_000442_170 Hb_006594_080--Hb_000442_170 Hb_006594_080--Hb_000313_230 Hb_006594_080--Hb_005288_060 Hb_007951_070 Hb_007951_070 Hb_008033_060--Hb_007951_070 Hb_001096_020 Hb_001096_020 Hb_008033_060--Hb_001096_020 Hb_000649_180 Hb_000649_180 Hb_008033_060--Hb_000649_180 Hb_007237_010 Hb_007237_010 Hb_008033_060--Hb_007237_010 Hb_000445_030 Hb_000445_030 Hb_008033_060--Hb_000445_030 Hb_000692_110 Hb_000692_110 Hb_008033_060--Hb_000692_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.072424 0.749264 1.89426 2.54463 0.421061 0.089928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0372599 1.51403 4.66905 5.20283

CAGE analysis