Hb_001096_020

Information

Type desease resistance
Description Gene Name: TIR
Location Contig1096: 56866-63382
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09620g
description hypothetical protein
nr
ID XP_011004903.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID B9N1N5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001096_020 0.0 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Populus euphratica]
2 Hb_008033_060 0.159409087 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
3 Hb_014324_010 0.1857216031 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
4 Hb_021854_020 0.2083402561 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
5 Hb_001141_040 0.2112664212 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
6 Hb_001085_210 0.2142548696 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
7 Hb_000054_110 0.2145110659 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
8 Hb_007951_070 0.2180158869 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
9 Hb_000649_180 0.2257190505 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
10 Hb_000453_130 0.2295744694 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
11 Hb_005214_080 0.2348060071 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009848_050 0.2410375937 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
13 Hb_000445_030 0.2433796747 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
14 Hb_185058_020 0.2498220512 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
15 Hb_012753_010 0.2507544791 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_000442_170 0.2559341188 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
17 Hb_013691_050 0.2575356487 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
18 Hb_007130_010 0.2624772081 - - -
19 Hb_000265_080 0.2689175583 - - Vacuolar cation/proton exchanger, putative [Ricinus communis]
20 Hb_001009_060 0.2693785906 - - PREDICTED: 4-coumarate--CoA ligase-like 9 [Jatropha curcas]

Gene co-expression network

sample Hb_001096_020 Hb_001096_020 Hb_008033_060 Hb_008033_060 Hb_001096_020--Hb_008033_060 Hb_014324_010 Hb_014324_010 Hb_001096_020--Hb_014324_010 Hb_021854_020 Hb_021854_020 Hb_001096_020--Hb_021854_020 Hb_001141_040 Hb_001141_040 Hb_001096_020--Hb_001141_040 Hb_001085_210 Hb_001085_210 Hb_001096_020--Hb_001085_210 Hb_000054_110 Hb_000054_110 Hb_001096_020--Hb_000054_110 Hb_007951_070 Hb_007951_070 Hb_008033_060--Hb_007951_070 Hb_000649_180 Hb_000649_180 Hb_008033_060--Hb_000649_180 Hb_007237_010 Hb_007237_010 Hb_008033_060--Hb_007237_010 Hb_000445_030 Hb_000445_030 Hb_008033_060--Hb_000445_030 Hb_000692_110 Hb_000692_110 Hb_008033_060--Hb_000692_110 Hb_009848_050 Hb_009848_050 Hb_014324_010--Hb_009848_050 Hb_049365_010 Hb_049365_010 Hb_014324_010--Hb_049365_010 Hb_014324_010--Hb_008033_060 Hb_097021_010 Hb_097021_010 Hb_014324_010--Hb_097021_010 Hb_142570_010 Hb_142570_010 Hb_014324_010--Hb_142570_010 Hb_021854_010 Hb_021854_010 Hb_021854_020--Hb_021854_010 Hb_113119_010 Hb_113119_010 Hb_021854_020--Hb_113119_010 Hb_001310_050 Hb_001310_050 Hb_021854_020--Hb_001310_050 Hb_010068_050 Hb_010068_050 Hb_021854_020--Hb_010068_050 Hb_006594_080 Hb_006594_080 Hb_021854_020--Hb_006594_080 Hb_021854_020--Hb_008033_060 Hb_002888_060 Hb_002888_060 Hb_001141_040--Hb_002888_060 Hb_000191_100 Hb_000191_100 Hb_001141_040--Hb_000191_100 Hb_005568_050 Hb_005568_050 Hb_001141_040--Hb_005568_050 Hb_002811_020 Hb_002811_020 Hb_001141_040--Hb_002811_020 Hb_000442_170 Hb_000442_170 Hb_001141_040--Hb_000442_170 Hb_000776_020 Hb_000776_020 Hb_001141_040--Hb_000776_020 Hb_185058_020 Hb_185058_020 Hb_001085_210--Hb_185058_020 Hb_013691_050 Hb_013691_050 Hb_001085_210--Hb_013691_050 Hb_003186_040 Hb_003186_040 Hb_001085_210--Hb_003186_040 Hb_069147_010 Hb_069147_010 Hb_001085_210--Hb_069147_010 Hb_001085_210--Hb_142570_010 Hb_012753_010 Hb_012753_010 Hb_000054_110--Hb_012753_010 Hb_003097_050 Hb_003097_050 Hb_000054_110--Hb_003097_050 Hb_005214_080 Hb_005214_080 Hb_000054_110--Hb_005214_080 Hb_001780_130 Hb_001780_130 Hb_000054_110--Hb_001780_130 Hb_005731_150 Hb_005731_150 Hb_000054_110--Hb_005731_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0108155 0.0202422 0.00753084 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0187176 0.0425587 0.0417626

CAGE analysis