Hb_003097_050

Information

Type -
Description -
Location Contig3097: 41042-42973
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07150g
description POPTRDRAFT_218006; hypothetical protein
nr
ID XP_006380485.1
description hypothetical protein POPTR_0007s07150g [Populus trichocarpa]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID B9HGD2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07150g PE=4 SV=2
Gene Ontology
ID GO:0005488
description transcription factor divaricata-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_050 0.0 - - hypothetical protein POPTR_0007s07150g [Populus trichocarpa]
2 Hb_000054_110 0.1884139015 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
3 Hb_167977_010 0.2361553472 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
4 Hb_004505_030 0.2370523205 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
5 Hb_006736_010 0.2438377076 - - -
6 Hb_003349_100 0.2457175813 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000141_010 0.2460582827 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
8 Hb_005731_150 0.2481015581 - - PREDICTED: uncharacterized protein LOC105630360 [Jatropha curcas]
9 Hb_001780_130 0.2483224803 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
10 Hb_001091_020 0.249035927 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_002863_080 0.2516740903 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
12 Hb_005214_080 0.2575849889 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000808_220 0.2606292418 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
14 Hb_053125_010 0.265215251 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
15 Hb_102011_010 0.2654507862 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_012753_010 0.2728582958 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_001485_010 0.2768396603 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
18 Hb_010490_060 0.2780111478 - - PREDICTED: uncharacterized protein LOC105767021 [Gossypium raimondii]
19 Hb_005511_090 0.2781733545 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
20 Hb_001079_070 0.2803369344 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003097_050 Hb_003097_050 Hb_000054_110 Hb_000054_110 Hb_003097_050--Hb_000054_110 Hb_167977_010 Hb_167977_010 Hb_003097_050--Hb_167977_010 Hb_004505_030 Hb_004505_030 Hb_003097_050--Hb_004505_030 Hb_006736_010 Hb_006736_010 Hb_003097_050--Hb_006736_010 Hb_003349_100 Hb_003349_100 Hb_003097_050--Hb_003349_100 Hb_000141_010 Hb_000141_010 Hb_003097_050--Hb_000141_010 Hb_012753_010 Hb_012753_010 Hb_000054_110--Hb_012753_010 Hb_005214_080 Hb_005214_080 Hb_000054_110--Hb_005214_080 Hb_001780_130 Hb_001780_130 Hb_000054_110--Hb_001780_130 Hb_005731_150 Hb_005731_150 Hb_000054_110--Hb_005731_150 Hb_001096_020 Hb_001096_020 Hb_000054_110--Hb_001096_020 Hb_053125_010 Hb_053125_010 Hb_167977_010--Hb_053125_010 Hb_065500_010 Hb_065500_010 Hb_167977_010--Hb_065500_010 Hb_012788_010 Hb_012788_010 Hb_167977_010--Hb_012788_010 Hb_001485_010 Hb_001485_010 Hb_167977_010--Hb_001485_010 Hb_113203_010 Hb_113203_010 Hb_167977_010--Hb_113203_010 Hb_102011_010 Hb_102011_010 Hb_167977_010--Hb_102011_010 Hb_042463_060 Hb_042463_060 Hb_004505_030--Hb_042463_060 Hb_000032_020 Hb_000032_020 Hb_004505_030--Hb_000032_020 Hb_010921_020 Hb_010921_020 Hb_004505_030--Hb_010921_020 Hb_048476_070 Hb_048476_070 Hb_004505_030--Hb_048476_070 Hb_010261_030 Hb_010261_030 Hb_004505_030--Hb_010261_030 Hb_002609_130 Hb_002609_130 Hb_004505_030--Hb_002609_130 Hb_170193_030 Hb_170193_030 Hb_006736_010--Hb_170193_030 Hb_006111_090 Hb_006111_090 Hb_006736_010--Hb_006111_090 Hb_002863_080 Hb_002863_080 Hb_006736_010--Hb_002863_080 Hb_000808_220 Hb_000808_220 Hb_006736_010--Hb_000808_220 Hb_003497_020 Hb_003497_020 Hb_006736_010--Hb_003497_020 Hb_000215_250 Hb_000215_250 Hb_006736_010--Hb_000215_250 Hb_003206_080 Hb_003206_080 Hb_003349_100--Hb_003206_080 Hb_003349_100--Hb_005731_150 Hb_000640_030 Hb_000640_030 Hb_003349_100--Hb_000640_030 Hb_005511_090 Hb_005511_090 Hb_003349_100--Hb_005511_090 Hb_003349_100--Hb_012753_010 Hb_000527_070 Hb_000527_070 Hb_000141_010--Hb_000527_070 Hb_002218_070 Hb_002218_070 Hb_000141_010--Hb_002218_070 Hb_001410_010 Hb_001410_010 Hb_000141_010--Hb_001410_010 Hb_082683_010 Hb_082683_010 Hb_000141_010--Hb_082683_010 Hb_002291_020 Hb_002291_020 Hb_000141_010--Hb_002291_020 Hb_001091_020 Hb_001091_020 Hb_000141_010--Hb_001091_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.816183 0.169087 0.196921 0.439769 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.28969 1.21718 0.885483

CAGE analysis