Hb_002863_080

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2863: 46109-47560
Sequence    

Annotation

kegg
ID rcu:RCOM_0897880
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_012073448.1
description PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
swissprot
ID O64973
description Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2
trembl
ID A0A067KLL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06192 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable disease resistance protein at5g63020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002863_080 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
2 Hb_006736_010 0.1946894014 - - -
3 Hb_000137_060 0.2462900372 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
4 Hb_000054_110 0.250173332 - - PREDICTED: uncharacterized protein LOC105350810 [Fragaria vesca subsp. vesca]
5 Hb_046998_010 0.250235031 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
6 Hb_003097_050 0.2516740903 - - hypothetical protein POPTR_0007s07150g [Populus trichocarpa]
7 Hb_007382_070 0.2606825789 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
8 Hb_001900_130 0.2619288498 - - PREDICTED: uncharacterized protein LOC105632667 [Jatropha curcas]
9 Hb_009230_020 0.2683682565 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
10 Hb_007130_010 0.268912373 - - -
11 Hb_006970_100 0.2705645175 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_000465_180 0.2731954968 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
13 Hb_001780_130 0.2736248371 - - hypothetical protein JCGZ_08545 [Jatropha curcas]
14 Hb_000661_230 0.2736594329 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
15 Hb_006651_010 0.2746336687 - - PREDICTED: protein disulfide isomerase-like 1-4-like [Citrus sinensis]
16 Hb_135554_010 0.2758744797 - - Insulin-degrading enzyme, putative [Ricinus communis]
17 Hb_010672_080 0.276374814 transcription factor TF Family: MYB hypothetical protein JCGZ_00902 [Jatropha curcas]
18 Hb_001519_240 0.2781539491 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_006096_020 0.2781942518 - - Os06g0343500 [Oryza sativa Japonica Group]
20 Hb_002928_220 0.2787788391 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]

Gene co-expression network

sample Hb_002863_080 Hb_002863_080 Hb_006736_010 Hb_006736_010 Hb_002863_080--Hb_006736_010 Hb_000137_060 Hb_000137_060 Hb_002863_080--Hb_000137_060 Hb_000054_110 Hb_000054_110 Hb_002863_080--Hb_000054_110 Hb_046998_010 Hb_046998_010 Hb_002863_080--Hb_046998_010 Hb_003097_050 Hb_003097_050 Hb_002863_080--Hb_003097_050 Hb_007382_070 Hb_007382_070 Hb_002863_080--Hb_007382_070 Hb_170193_030 Hb_170193_030 Hb_006736_010--Hb_170193_030 Hb_006111_090 Hb_006111_090 Hb_006736_010--Hb_006111_090 Hb_000808_220 Hb_000808_220 Hb_006736_010--Hb_000808_220 Hb_003497_020 Hb_003497_020 Hb_006736_010--Hb_003497_020 Hb_000215_250 Hb_000215_250 Hb_006736_010--Hb_000215_250 Hb_000465_180 Hb_000465_180 Hb_000137_060--Hb_000465_180 Hb_001288_050 Hb_001288_050 Hb_000137_060--Hb_001288_050 Hb_000567_150 Hb_000567_150 Hb_000137_060--Hb_000567_150 Hb_001571_020 Hb_001571_020 Hb_000137_060--Hb_001571_020 Hb_001005_040 Hb_001005_040 Hb_000137_060--Hb_001005_040 Hb_007130_010 Hb_007130_010 Hb_000137_060--Hb_007130_010 Hb_012753_010 Hb_012753_010 Hb_000054_110--Hb_012753_010 Hb_000054_110--Hb_003097_050 Hb_005214_080 Hb_005214_080 Hb_000054_110--Hb_005214_080 Hb_001780_130 Hb_001780_130 Hb_000054_110--Hb_001780_130 Hb_005731_150 Hb_005731_150 Hb_000054_110--Hb_005731_150 Hb_001096_020 Hb_001096_020 Hb_000054_110--Hb_001096_020 Hb_012033_010 Hb_012033_010 Hb_046998_010--Hb_012033_010 Hb_002893_190 Hb_002893_190 Hb_046998_010--Hb_002893_190 Hb_002811_020 Hb_002811_020 Hb_046998_010--Hb_002811_020 Hb_046998_010--Hb_005214_080 Hb_011853_010 Hb_011853_010 Hb_046998_010--Hb_011853_010 Hb_004096_220 Hb_004096_220 Hb_046998_010--Hb_004096_220 Hb_167977_010 Hb_167977_010 Hb_003097_050--Hb_167977_010 Hb_004505_030 Hb_004505_030 Hb_003097_050--Hb_004505_030 Hb_003097_050--Hb_006736_010 Hb_003349_100 Hb_003349_100 Hb_003097_050--Hb_003349_100 Hb_000141_010 Hb_000141_010 Hb_003097_050--Hb_000141_010 Hb_006970_100 Hb_006970_100 Hb_007382_070--Hb_006970_100 Hb_007382_070--Hb_000465_180 Hb_029576_080 Hb_029576_080 Hb_007382_070--Hb_029576_080 Hb_002928_220 Hb_002928_220 Hb_007382_070--Hb_002928_220 Hb_000149_120 Hb_000149_120 Hb_007382_070--Hb_000149_120 Hb_006651_010 Hb_006651_010 Hb_007382_070--Hb_006651_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.325599 0.18883 0.129457 0.381494 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0324235 0 0 1.37517 0.74606

CAGE analysis