Hb_004505_030

Information

Type -
Description -
Location Contig4505: 28283-33320
Sequence    

Annotation

kegg
ID bvg:104890706
description putative ribonuclease H protein At1g65750
nr
ID XP_010674584.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID F4NCK9
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004505_030 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
2 Hb_042463_060 0.1354787075 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000032_020 0.1776496178 - - Centromeric protein E, putative [Ricinus communis]
4 Hb_010921_020 0.1914346174 - - PREDICTED: cyclin-SDS [Jatropha curcas]
5 Hb_048476_070 0.1978572481 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010261_030 0.2048676809 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_002609_130 0.2082520962 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
8 Hb_147873_010 0.2096150904 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
9 Hb_000879_030 0.2124315825 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
10 Hb_000221_180 0.2129952581 - - VQ motif-containing family protein [Populus trichocarpa]
11 Hb_004605_020 0.2139582316 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
12 Hb_000141_010 0.2146188427 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
13 Hb_073973_020 0.2149644305 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
14 Hb_136660_010 0.2151471587 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002110_110 0.218146506 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
16 Hb_005155_010 0.2191297001 - - amino acid transporter, putative [Ricinus communis]
17 Hb_083242_020 0.2199655153 - - hypothetical protein JCGZ_20097 [Jatropha curcas]
18 Hb_001496_120 0.2200333503 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
19 Hb_002217_070 0.2218153397 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
20 Hb_001091_020 0.2238398577 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004505_030 Hb_004505_030 Hb_042463_060 Hb_042463_060 Hb_004505_030--Hb_042463_060 Hb_000032_020 Hb_000032_020 Hb_004505_030--Hb_000032_020 Hb_010921_020 Hb_010921_020 Hb_004505_030--Hb_010921_020 Hb_048476_070 Hb_048476_070 Hb_004505_030--Hb_048476_070 Hb_010261_030 Hb_010261_030 Hb_004505_030--Hb_010261_030 Hb_002609_130 Hb_002609_130 Hb_004505_030--Hb_002609_130 Hb_005155_010 Hb_005155_010 Hb_042463_060--Hb_005155_010 Hb_002110_110 Hb_002110_110 Hb_042463_060--Hb_002110_110 Hb_004605_020 Hb_004605_020 Hb_042463_060--Hb_004605_020 Hb_003517_090 Hb_003517_090 Hb_042463_060--Hb_003517_090 Hb_042463_060--Hb_000032_020 Hb_000879_030 Hb_000879_030 Hb_000032_020--Hb_000879_030 Hb_000032_020--Hb_002110_110 Hb_000221_180 Hb_000221_180 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000175_270 Hb_000175_270 Hb_000032_020--Hb_000175_270 Hb_005542_010 Hb_005542_010 Hb_000032_020--Hb_005542_010 Hb_000922_220 Hb_000922_220 Hb_010921_020--Hb_000922_220 Hb_010921_020--Hb_000175_270 Hb_001073_030 Hb_001073_030 Hb_010921_020--Hb_001073_030 Hb_010921_020--Hb_000032_020 Hb_005183_140 Hb_005183_140 Hb_010921_020--Hb_005183_140 Hb_000320_360 Hb_000320_360 Hb_010921_020--Hb_000320_360 Hb_005470_040 Hb_005470_040 Hb_048476_070--Hb_005470_040 Hb_031949_010 Hb_031949_010 Hb_048476_070--Hb_031949_010 Hb_002815_040 Hb_002815_040 Hb_048476_070--Hb_002815_040 Hb_000417_150 Hb_000417_150 Hb_048476_070--Hb_000417_150 Hb_026053_030 Hb_026053_030 Hb_048476_070--Hb_026053_030 Hb_067345_020 Hb_067345_020 Hb_048476_070--Hb_067345_020 Hb_117840_010 Hb_117840_010 Hb_010261_030--Hb_117840_010 Hb_010261_030--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_010261_030--Hb_062229_010 Hb_010261_030--Hb_005155_010 Hb_002218_070 Hb_002218_070 Hb_010261_030--Hb_002218_070 Hb_001971_020 Hb_001971_020 Hb_010261_030--Hb_001971_020 Hb_002609_130--Hb_004605_020 Hb_002609_130--Hb_005155_010 Hb_000847_010 Hb_000847_010 Hb_002609_130--Hb_000847_010 Hb_000816_160 Hb_000816_160 Hb_002609_130--Hb_000816_160 Hb_005271_180 Hb_005271_180 Hb_002609_130--Hb_005271_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157323 1.3269 0.323558 0.343914 0.231823 0.017209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.233443 0.7344 1.22651

CAGE analysis