Hb_001310_050

Information

Type -
Description -
Location Contig1310: 50427-56051
Sequence    

Annotation

kegg
ID pop:POPTR_0007s09870g
description hypothetical protein
nr
ID XP_012079397.1
description PREDICTED: formin-like protein 6 [Jatropha curcas]
swissprot
ID Q9FJX6
description Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=2 SV=1
trembl
ID A0A067K7G8
description Formin-like protein OS=Jatropha curcas GN=JCGZ_12528 PE=3 SV=1
Gene Ontology
ID GO:0005618
description formin-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09138: 50363-56044
cDNA
(Sanger)
(ID:Location)		 047_D23.ab1: 55486-56040

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001310_050 0.0 - - PREDICTED: formin-like protein 6 [Jatropha curcas]
2 Hb_000313_230 0.1440797606 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
3 Hb_002518_180 0.1448488834 - - hypothetical protein POPTR_0001s25460g [Populus trichocarpa]
4 Hb_003783_050 0.1509318458 - - conserved hypothetical protein [Ricinus communis]
5 Hb_030312_030 0.1580291821 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
6 Hb_036388_010 0.1606799313 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
7 Hb_004326_010 0.1608293496 - - cationic amino acid transporter, putative [Ricinus communis]
8 Hb_000941_120 0.1621416683 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
9 Hb_008066_080 0.1621933391 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
10 Hb_000107_550 0.1622620122 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
11 Hb_008790_040 0.1656696251 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Jatropha curcas]
12 Hb_000120_740 0.1667311642 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
13 Hb_002495_030 0.1675634164 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
14 Hb_006615_230 0.168436334 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
15 Hb_007590_100 0.1687565497 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
16 Hb_001105_130 0.1697470259 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
17 Hb_021854_010 0.1698227333 - - -
18 Hb_000417_380 0.1722159097 - - SecY protein transport family protein [Theobroma cacao]
19 Hb_003030_010 0.1723183481 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
20 Hb_003371_190 0.1733805544 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]

Gene co-expression network

sample Hb_001310_050 Hb_001310_050 Hb_000313_230 Hb_000313_230 Hb_001310_050--Hb_000313_230 Hb_002518_180 Hb_002518_180 Hb_001310_050--Hb_002518_180 Hb_003783_050 Hb_003783_050 Hb_001310_050--Hb_003783_050 Hb_030312_030 Hb_030312_030 Hb_001310_050--Hb_030312_030 Hb_036388_010 Hb_036388_010 Hb_001310_050--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_001310_050--Hb_004326_010 Hb_005332_050 Hb_005332_050 Hb_000313_230--Hb_005332_050 Hb_001054_060 Hb_001054_060 Hb_000313_230--Hb_001054_060 Hb_006594_080 Hb_006594_080 Hb_000313_230--Hb_006594_080 Hb_005288_060 Hb_005288_060 Hb_000313_230--Hb_005288_060 Hb_000997_320 Hb_000997_320 Hb_000313_230--Hb_000997_320 Hb_033594_100 Hb_033594_100 Hb_002518_180--Hb_033594_100 Hb_009535_030 Hb_009535_030 Hb_002518_180--Hb_009535_030 Hb_004007_200 Hb_004007_200 Hb_002518_180--Hb_004007_200 Hb_187959_010 Hb_187959_010 Hb_002518_180--Hb_187959_010 Hb_000970_020 Hb_000970_020 Hb_002518_180--Hb_000970_020 Hb_098533_010 Hb_098533_010 Hb_002518_180--Hb_098533_010 Hb_000941_120 Hb_000941_120 Hb_003783_050--Hb_000941_120 Hb_003783_050--Hb_036388_010 Hb_003783_050--Hb_030312_030 Hb_001916_150 Hb_001916_150 Hb_003783_050--Hb_001916_150 Hb_035834_010 Hb_035834_010 Hb_003783_050--Hb_035834_010 Hb_000445_370 Hb_000445_370 Hb_003783_050--Hb_000445_370 Hb_001195_370 Hb_001195_370 Hb_030312_030--Hb_001195_370 Hb_030312_030--Hb_001054_060 Hb_030312_030--Hb_000941_120 Hb_003006_080 Hb_003006_080 Hb_030312_030--Hb_003006_080 Hb_002805_090 Hb_002805_090 Hb_030312_030--Hb_002805_090 Hb_000768_150 Hb_000768_150 Hb_036388_010--Hb_000768_150 Hb_036388_010--Hb_035834_010 Hb_036388_010--Hb_000997_320 Hb_006736_050 Hb_006736_050 Hb_036388_010--Hb_006736_050 Hb_000417_380 Hb_000417_380 Hb_036388_010--Hb_000417_380 Hb_007537_030 Hb_007537_030 Hb_004326_010--Hb_007537_030 Hb_000570_020 Hb_000570_020 Hb_004326_010--Hb_000570_020 Hb_000157_140 Hb_000157_140 Hb_004326_010--Hb_000157_140 Hb_000181_460 Hb_000181_460 Hb_004326_010--Hb_000181_460 Hb_000120_740 Hb_000120_740 Hb_004326_010--Hb_000120_740 Hb_001105_130 Hb_001105_130 Hb_004326_010--Hb_001105_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.258516 2.67446 3.16261 10.2798 0.572865 0.619879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0513114 0.403793 2.26347 6.75823 9.86266

CAGE analysis