Hb_038044_020

Information

Type -
Description -
Location Contig38044: 19788-26202
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038044_020 0.0 - - -
2 Hb_005896_010 0.2791438955 - - -
3 Hb_001206_010 0.2811175674 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
4 Hb_000626_040 0.2822783523 - - PREDICTED: TATA-box-binding protein 1-like [Jatropha curcas]
5 Hb_000840_040 0.2911605583 - - monoxygenase, putative [Ricinus communis]
6 Hb_007042_010 0.2928330758 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_003206_080 0.2985129738 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
8 Hb_011663_020 0.3039533702 - - Putative retrotransposon protein, identical [Solanum demissum]
9 Hb_002656_010 0.3055198808 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
10 Hb_126103_010 0.3274620656 - - Phosphoprotein phosphatase [Theobroma cacao]
11 Hb_002995_030 0.3281168628 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005016_110 0.3317426989 - - -
13 Hb_020581_040 0.3318268393 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like isoform X3 [Sesamum indicum]
14 Hb_005045_040 0.3365024141 - - hypothetical protein POPTR_0017s04090g, partial [Populus trichocarpa]
15 Hb_001545_030 0.3379518453 - - -
16 Hb_151694_010 0.3386147069 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
17 Hb_004296_030 0.3416984913 - - PREDICTED: gamma-tubulin complex component 3 [Jatropha curcas]
18 Hb_159198_010 0.3421151287 - - hypothetical protein VITISV_033829 [Vitis vinifera]
19 Hb_003469_010 0.3435608364 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
20 Hb_005736_070 0.3445254063 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_038044_020 Hb_038044_020 Hb_005896_010 Hb_005896_010 Hb_038044_020--Hb_005896_010 Hb_001206_010 Hb_001206_010 Hb_038044_020--Hb_001206_010 Hb_000626_040 Hb_000626_040 Hb_038044_020--Hb_000626_040 Hb_000840_040 Hb_000840_040 Hb_038044_020--Hb_000840_040 Hb_007042_010 Hb_007042_010 Hb_038044_020--Hb_007042_010 Hb_003206_080 Hb_003206_080 Hb_038044_020--Hb_003206_080 Hb_006683_030 Hb_006683_030 Hb_005896_010--Hb_006683_030 Hb_002656_010 Hb_002656_010 Hb_005896_010--Hb_002656_010 Hb_159198_010 Hb_159198_010 Hb_005896_010--Hb_159198_010 Hb_005896_010--Hb_000840_040 Hb_008749_090 Hb_008749_090 Hb_005896_010--Hb_008749_090 Hb_003517_010 Hb_003517_010 Hb_005896_010--Hb_003517_010 Hb_014879_010 Hb_014879_010 Hb_001206_010--Hb_014879_010 Hb_000172_130 Hb_000172_130 Hb_001206_010--Hb_000172_130 Hb_024411_010 Hb_024411_010 Hb_001206_010--Hb_024411_010 Hb_057451_040 Hb_057451_040 Hb_001206_010--Hb_057451_040 Hb_001062_020 Hb_001062_020 Hb_001206_010--Hb_001062_020 Hb_002660_060 Hb_002660_060 Hb_000626_040--Hb_002660_060 Hb_005736_070 Hb_005736_070 Hb_000626_040--Hb_005736_070 Hb_004462_020 Hb_004462_020 Hb_000626_040--Hb_004462_020 Hb_000626_040--Hb_000840_040 Hb_000626_040--Hb_002656_010 Hb_003185_100 Hb_003185_100 Hb_000840_040--Hb_003185_100 Hb_149515_010 Hb_149515_010 Hb_000840_040--Hb_149515_010 Hb_000141_010 Hb_000141_010 Hb_000840_040--Hb_000141_010 Hb_000840_040--Hb_159198_010 Hb_002043_010 Hb_002043_010 Hb_000840_040--Hb_002043_010 Hb_001485_010 Hb_001485_010 Hb_000840_040--Hb_001485_010 Hb_007802_020 Hb_007802_020 Hb_007042_010--Hb_007802_020 Hb_003494_040 Hb_003494_040 Hb_007042_010--Hb_003494_040 Hb_126103_010 Hb_126103_010 Hb_007042_010--Hb_126103_010 Hb_001568_110 Hb_001568_110 Hb_007042_010--Hb_001568_110 Hb_116349_040 Hb_116349_040 Hb_007042_010--Hb_116349_040 Hb_007042_010--Hb_000840_040 Hb_003349_100 Hb_003349_100 Hb_003206_080--Hb_003349_100 Hb_003206_080--Hb_005896_010 Hb_003097_050 Hb_003097_050 Hb_003206_080--Hb_003097_050 Hb_035687_010 Hb_035687_010 Hb_003206_080--Hb_035687_010 Hb_001221_370 Hb_001221_370 Hb_003206_080--Hb_001221_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.252342 0 0 0 0.0308428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.086999 0.115692 0.0966041

CAGE analysis