Hb_007042_010

Information

Type -
Description -
Location Contig7042: 26043-35942
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007042_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_007802_020 0.2594228359 - - PREDICTED: receptor-like protein 12 [Eucalyptus grandis]
3 Hb_003494_040 0.2633915465 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
4 Hb_126103_010 0.2656320158 - - Phosphoprotein phosphatase [Theobroma cacao]
5 Hb_001568_110 0.270218778 - - BnaA02g12660D [Brassica napus]
6 Hb_116349_040 0.2774697032 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
7 Hb_000840_040 0.2845330931 - - monoxygenase, putative [Ricinus communis]
8 Hb_002656_010 0.2848839468 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
9 Hb_038044_020 0.2928330758 - - -
10 Hb_115791_020 0.3092985788 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
11 Hb_002241_030 0.3103983556 - - Retrotransposon protein, putative [Theobroma cacao]
12 Hb_007007_070 0.3107557992 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
13 Hb_029243_020 0.3149091832 - - ENTH/VHS/GAT family protein [Theobroma cacao]
14 Hb_001288_070 0.3165025963 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
15 Hb_001377_250 0.3176479466 - - dynamin, putative [Ricinus communis]
16 Hb_000866_370 0.3182161894 - - synaptotagmin, putative [Ricinus communis]
17 Hb_000661_260 0.3191111802 - - PREDICTED: uncharacterized protein LOC105648304 [Jatropha curcas]
18 Hb_012812_010 0.3234115174 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
19 Hb_002233_020 0.3241850273 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
20 Hb_000024_010 0.3248299358 - - Uncharacterized protein TCM_044274 [Theobroma cacao]

Gene co-expression network

sample Hb_007042_010 Hb_007042_010 Hb_007802_020 Hb_007802_020 Hb_007042_010--Hb_007802_020 Hb_003494_040 Hb_003494_040 Hb_007042_010--Hb_003494_040 Hb_126103_010 Hb_126103_010 Hb_007042_010--Hb_126103_010 Hb_001568_110 Hb_001568_110 Hb_007042_010--Hb_001568_110 Hb_116349_040 Hb_116349_040 Hb_007042_010--Hb_116349_040 Hb_000840_040 Hb_000840_040 Hb_007042_010--Hb_000840_040 Hb_007802_020--Hb_116349_040 Hb_005779_040 Hb_005779_040 Hb_007802_020--Hb_005779_040 Hb_006453_010 Hb_006453_010 Hb_007802_020--Hb_006453_010 Hb_012098_170 Hb_012098_170 Hb_007802_020--Hb_012098_170 Hb_001825_020 Hb_001825_020 Hb_007802_020--Hb_001825_020 Hb_009296_050 Hb_009296_050 Hb_003494_040--Hb_009296_050 Hb_007520_070 Hb_007520_070 Hb_003494_040--Hb_007520_070 Hb_121992_010 Hb_121992_010 Hb_003494_040--Hb_121992_010 Hb_026698_030 Hb_026698_030 Hb_003494_040--Hb_026698_030 Hb_012788_010 Hb_012788_010 Hb_003494_040--Hb_012788_010 Hb_003371_140 Hb_003371_140 Hb_126103_010--Hb_003371_140 Hb_147873_010 Hb_147873_010 Hb_126103_010--Hb_147873_010 Hb_001230_020 Hb_001230_020 Hb_126103_010--Hb_001230_020 Hb_002078_090 Hb_002078_090 Hb_126103_010--Hb_002078_090 Hb_001863_450 Hb_001863_450 Hb_126103_010--Hb_001863_450 Hb_136660_010 Hb_136660_010 Hb_126103_010--Hb_136660_010 Hb_001568_110--Hb_126103_010 Hb_005736_070 Hb_005736_070 Hb_001568_110--Hb_005736_070 Hb_067034_030 Hb_067034_030 Hb_001568_110--Hb_067034_030 Hb_002686_400 Hb_002686_400 Hb_001568_110--Hb_002686_400 Hb_001568_110--Hb_001825_020 Hb_000685_060 Hb_000685_060 Hb_001568_110--Hb_000685_060 Hb_008066_070 Hb_008066_070 Hb_116349_040--Hb_008066_070 Hb_007576_200 Hb_007576_200 Hb_116349_040--Hb_007576_200 Hb_000023_250 Hb_000023_250 Hb_116349_040--Hb_000023_250 Hb_116349_040--Hb_006453_010 Hb_006446_010 Hb_006446_010 Hb_116349_040--Hb_006446_010 Hb_001053_090 Hb_001053_090 Hb_116349_040--Hb_001053_090 Hb_003185_100 Hb_003185_100 Hb_000840_040--Hb_003185_100 Hb_149515_010 Hb_149515_010 Hb_000840_040--Hb_149515_010 Hb_000141_010 Hb_000141_010 Hb_000840_040--Hb_000141_010 Hb_159198_010 Hb_159198_010 Hb_000840_040--Hb_159198_010 Hb_002043_010 Hb_002043_010 Hb_000840_040--Hb_002043_010 Hb_001485_010 Hb_001485_010 Hb_000840_040--Hb_001485_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00443229 0.0353856 0 0.00261299 0 0.0031306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00812492 0 0.0123172 0.0151801 0.0137471

CAGE analysis