Hb_001825_020

Information

Type -
Description -
Location Contig1825: 18516-19070
Sequence    

Annotation

kegg
ID rcu:RCOM_0993110
description nucleic acid binding protein, putative
nr
ID XP_002521018.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9SR34
description Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1 PE=2 SV=1
trembl
ID B9S4W1
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0993110 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transcriptional regulator superman-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001825_020 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_010620_020 0.1636884953 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_006501_170 0.1789378535 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
4 Hb_005736_070 0.1885431763 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
5 Hb_001195_730 0.2102609868 - - PREDICTED: protein LYK5-like [Jatropha curcas]
6 Hb_002284_030 0.2103000319 - - PREDICTED: xylem cysteine proteinase 2 [Jatropha curcas]
7 Hb_011214_140 0.215584949 - - Ran GTPase binding protein, putative [Ricinus communis]
8 Hb_004462_020 0.2168796045 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
9 Hb_002995_030 0.2177748784 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003371_140 0.2211683397 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
11 Hb_008616_060 0.2214780689 - - syntaxin, putative [Ricinus communis]
12 Hb_003142_090 0.2217063352 - - Kinase, putative isoform 2 [Theobroma cacao]
13 Hb_001009_110 0.2219373242 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
14 Hb_126103_010 0.2222587362 - - Phosphoprotein phosphatase [Theobroma cacao]
15 Hb_129399_010 0.2251938672 - - cytochrome P450, putative [Ricinus communis]
16 Hb_000146_110 0.2260902859 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
17 Hb_003086_050 0.2274836062 - - calcium-dependent protein kinase, putative [Ricinus communis]
18 Hb_000003_620 0.2282339049 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
19 Hb_005048_050 0.2295746105 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
20 Hb_001454_160 0.2315423807 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001825_020 Hb_001825_020 Hb_010620_020 Hb_010620_020 Hb_001825_020--Hb_010620_020 Hb_006501_170 Hb_006501_170 Hb_001825_020--Hb_006501_170 Hb_005736_070 Hb_005736_070 Hb_001825_020--Hb_005736_070 Hb_001195_730 Hb_001195_730 Hb_001825_020--Hb_001195_730 Hb_002284_030 Hb_002284_030 Hb_001825_020--Hb_002284_030 Hb_011214_140 Hb_011214_140 Hb_001825_020--Hb_011214_140 Hb_129399_010 Hb_129399_010 Hb_010620_020--Hb_129399_010 Hb_000146_110 Hb_000146_110 Hb_010620_020--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_010620_020--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_010620_020--Hb_009778_030 Hb_001363_030 Hb_001363_030 Hb_010620_020--Hb_001363_030 Hb_000111_130 Hb_000111_130 Hb_010620_020--Hb_000111_130 Hb_002518_270 Hb_002518_270 Hb_006501_170--Hb_002518_270 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_008948_080 Hb_008948_080 Hb_006501_170--Hb_008948_080 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140 Hb_006501_170--Hb_011214_140 Hb_005736_070--Hb_011214_140 Hb_001009_110 Hb_001009_110 Hb_005736_070--Hb_001009_110 Hb_005736_070--Hb_006501_170 Hb_005736_070--Hb_008948_080 Hb_005736_070--Hb_010620_020 Hb_001195_730--Hb_006501_170 Hb_000126_040 Hb_000126_040 Hb_001195_730--Hb_000126_040 Hb_011716_050 Hb_011716_050 Hb_001195_730--Hb_011716_050 Hb_001230_020 Hb_001230_020 Hb_001195_730--Hb_001230_020 Hb_012812_010 Hb_012812_010 Hb_001195_730--Hb_012812_010 Hb_001230_030 Hb_001230_030 Hb_001195_730--Hb_001230_030 Hb_002284_030--Hb_006501_170 Hb_000297_100 Hb_000297_100 Hb_002284_030--Hb_000297_100 Hb_000752_020 Hb_000752_020 Hb_002284_030--Hb_000752_020 Hb_000340_250 Hb_000340_250 Hb_002284_030--Hb_000340_250 Hb_000252_080 Hb_000252_080 Hb_002284_030--Hb_000252_080 Hb_004459_110 Hb_004459_110 Hb_002284_030--Hb_004459_110 Hb_011214_140--Hb_001009_110 Hb_000030_260 Hb_000030_260 Hb_011214_140--Hb_000030_260 Hb_000343_260 Hb_000343_260 Hb_011214_140--Hb_000343_260 Hb_000521_300 Hb_000521_300 Hb_011214_140--Hb_000521_300 Hb_000086_370 Hb_000086_370 Hb_011214_140--Hb_000086_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.74344 0.0745914 0.214305 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113652 0.178612 0.154276 0.883461 0.511579

CAGE analysis