Hb_000030_260

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig30: 207170-210710
Sequence    

Annotation

kegg
ID rcu:RCOM_1122050
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_002525457.1
description leucine-rich repeat containing protein, putative [Ricinus communis]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID B9SHI8
description Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_1122050 PE=4 SV=1
Gene Ontology
ID GO:0004721
description leucine-rich repeat containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31523: 207473-207605 , PASA_asmbl_31526: 209640-209799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000030_260 0.0 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
2 Hb_011791_010 0.1276417305 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
3 Hb_010578_050 0.1290215268 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
4 Hb_002783_320 0.1345028876 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X1 [Jatropha curcas]
5 Hb_000223_050 0.13468942 - - PREDICTED: endochitinase A-like [Jatropha curcas]
6 Hb_001838_010 0.1352492075 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
7 Hb_000723_120 0.1360889886 - - PREDICTED: UDP-glycosyltransferase 86A1 [Jatropha curcas]
8 Hb_008948_080 0.141322261 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
9 Hb_000625_060 0.1423461944 - - Protein P21, putative [Ricinus communis]
10 Hb_011214_140 0.142610162 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_000120_070 0.1442995501 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
12 Hb_002917_030 0.1457136226 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
13 Hb_001355_110 0.1468201927 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
14 Hb_000489_020 0.1486575415 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
15 Hb_012753_200 0.1497547432 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
16 Hb_000579_180 0.1498062825 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
17 Hb_002805_150 0.1498191579 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
18 Hb_000512_080 0.1499699288 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000836_390 0.153354247 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
20 Hb_000676_030 0.1535893527 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]

Gene co-expression network

sample Hb_000030_260 Hb_000030_260 Hb_011791_010 Hb_011791_010 Hb_000030_260--Hb_011791_010 Hb_010578_050 Hb_010578_050 Hb_000030_260--Hb_010578_050 Hb_002783_320 Hb_002783_320 Hb_000030_260--Hb_002783_320 Hb_000223_050 Hb_000223_050 Hb_000030_260--Hb_000223_050 Hb_001838_010 Hb_001838_010 Hb_000030_260--Hb_001838_010 Hb_000723_120 Hb_000723_120 Hb_000030_260--Hb_000723_120 Hb_000676_030 Hb_000676_030 Hb_011791_010--Hb_000676_030 Hb_002219_090 Hb_002219_090 Hb_011791_010--Hb_002219_090 Hb_001073_060 Hb_001073_060 Hb_011791_010--Hb_001073_060 Hb_079955_010 Hb_079955_010 Hb_011791_010--Hb_079955_010 Hb_000333_130 Hb_000333_130 Hb_011791_010--Hb_000333_130 Hb_106969_010 Hb_106969_010 Hb_011791_010--Hb_106969_010 Hb_005186_090 Hb_005186_090 Hb_010578_050--Hb_005186_090 Hb_010578_050--Hb_002783_320 Hb_000625_060 Hb_000625_060 Hb_010578_050--Hb_000625_060 Hb_000836_390 Hb_000836_390 Hb_010578_050--Hb_000836_390 Hb_000120_070 Hb_000120_070 Hb_010578_050--Hb_000120_070 Hb_002783_320--Hb_000676_030 Hb_017866_020 Hb_017866_020 Hb_002783_320--Hb_017866_020 Hb_011970_040 Hb_011970_040 Hb_002783_320--Hb_011970_040 Hb_004195_170 Hb_004195_170 Hb_002783_320--Hb_004195_170 Hb_000512_080 Hb_000512_080 Hb_000223_050--Hb_000512_080 Hb_000075_110 Hb_000075_110 Hb_000223_050--Hb_000075_110 Hb_006970_150 Hb_006970_150 Hb_000223_050--Hb_006970_150 Hb_001481_030 Hb_001481_030 Hb_000223_050--Hb_001481_030 Hb_165404_010 Hb_165404_010 Hb_000223_050--Hb_165404_010 Hb_002085_070 Hb_002085_070 Hb_000223_050--Hb_002085_070 Hb_000255_020 Hb_000255_020 Hb_001838_010--Hb_000255_020 Hb_005333_100 Hb_005333_100 Hb_001838_010--Hb_005333_100 Hb_001838_010--Hb_106969_010 Hb_002007_140 Hb_002007_140 Hb_001838_010--Hb_002007_140 Hb_000265_010 Hb_000265_010 Hb_001838_010--Hb_000265_010 Hb_000976_060 Hb_000976_060 Hb_001838_010--Hb_000976_060 Hb_008948_080 Hb_008948_080 Hb_000723_120--Hb_008948_080 Hb_000723_120--Hb_010578_050 Hb_000723_120--Hb_000120_070 Hb_000008_080 Hb_000008_080 Hb_000723_120--Hb_000008_080 Hb_001514_210 Hb_001514_210 Hb_000723_120--Hb_001514_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0264548 2.05246 0.384454 0.318134 0 0.0255687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.020038 0.0384053 1.67979 0.107109

CAGE analysis