Hb_002284_030

Information

Type -
Description -
Location Contig2284: 34389-35921
Sequence    

Annotation

kegg
ID pop:POPTR_0005s27730g
description POPTRDRAFT_715679; XYLEM CYSTEINE PEPTIDASE 2 family protein
nr
ID XP_012073590.1
description PREDICTED: xylem cysteine proteinase 2 [Jatropha curcas]
swissprot
ID Q9LM66
description Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=2 SV=2
trembl
ID A0A067KWY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08041 PE=3 SV=1
Gene Ontology
ID GO:0003824
description xylem cysteine proteinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 047_J16r.ab1: 34108-34875

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_030 0.0 - - PREDICTED: xylem cysteine proteinase 2 [Jatropha curcas]
2 Hb_006501_170 0.1888581218 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
3 Hb_000297_100 0.1916988862 transcription factor TF Family: NAC NAC transcription factor 038 [Jatropha curcas]
4 Hb_000752_020 0.193361081 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
5 Hb_000340_250 0.1960835646 - - PREDICTED: probable galacturonosyltransferase-like 4 [Jatropha curcas]
6 Hb_000252_080 0.1980554756 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
7 Hb_004459_110 0.1988303237 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
8 Hb_000417_030 0.199989376 transcription factor TF Family: G2-like PREDICTED: putative two-component response regulator ARR19 [Jatropha curcas]
9 Hb_000836_560 0.2017346612 - - -
10 Hb_002284_020 0.2018174711 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
11 Hb_001568_060 0.2043892327 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
12 Hb_002518_270 0.2063849887 - - glycogen phosphorylase, putative [Ricinus communis]
13 Hb_001195_730 0.2065455418 - - PREDICTED: protein LYK5-like [Jatropha curcas]
14 Hb_129399_010 0.2076232241 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000002_100 0.2096641696 - - phosphate transporter [Manihot esculenta]
16 Hb_001825_020 0.2103000319 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_004230_060 0.21089017 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
18 Hb_010620_020 0.2109940431 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_008948_080 0.2117181534 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
20 Hb_000027_130 0.2138184168 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_030 Hb_002284_030 Hb_006501_170 Hb_006501_170 Hb_002284_030--Hb_006501_170 Hb_000297_100 Hb_000297_100 Hb_002284_030--Hb_000297_100 Hb_000752_020 Hb_000752_020 Hb_002284_030--Hb_000752_020 Hb_000340_250 Hb_000340_250 Hb_002284_030--Hb_000340_250 Hb_000252_080 Hb_000252_080 Hb_002284_030--Hb_000252_080 Hb_004459_110 Hb_004459_110 Hb_002284_030--Hb_004459_110 Hb_002518_270 Hb_002518_270 Hb_006501_170--Hb_002518_270 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_008948_080 Hb_008948_080 Hb_006501_170--Hb_008948_080 Hb_003371_140 Hb_003371_140 Hb_006501_170--Hb_003371_140 Hb_011214_140 Hb_011214_140 Hb_006501_170--Hb_011214_140 Hb_002284_020 Hb_002284_020 Hb_000297_100--Hb_002284_020 Hb_000307_110 Hb_000307_110 Hb_000297_100--Hb_000307_110 Hb_005545_080 Hb_005545_080 Hb_000297_100--Hb_005545_080 Hb_001568_060 Hb_001568_060 Hb_000297_100--Hb_001568_060 Hb_141990_050 Hb_141990_050 Hb_000297_100--Hb_141990_050 Hb_004712_140 Hb_004712_140 Hb_000297_100--Hb_004712_140 Hb_000027_130 Hb_000027_130 Hb_000752_020--Hb_000027_130 Hb_000771_070 Hb_000771_070 Hb_000752_020--Hb_000771_070 Hb_000473_080 Hb_000473_080 Hb_000752_020--Hb_000473_080 Hb_003529_230 Hb_003529_230 Hb_000752_020--Hb_003529_230 Hb_000752_020--Hb_000252_080 Hb_005814_010 Hb_005814_010 Hb_000752_020--Hb_005814_010 Hb_000169_060 Hb_000169_060 Hb_000340_250--Hb_000169_060 Hb_000836_560 Hb_000836_560 Hb_000340_250--Hb_000836_560 Hb_004994_190 Hb_004994_190 Hb_000340_250--Hb_004994_190 Hb_001556_020 Hb_001556_020 Hb_000340_250--Hb_001556_020 Hb_001140_320 Hb_001140_320 Hb_000340_250--Hb_001140_320 Hb_009083_010 Hb_009083_010 Hb_000252_080--Hb_009083_010 Hb_000252_080--Hb_004459_110 Hb_006970_150 Hb_006970_150 Hb_000252_080--Hb_006970_150 Hb_006120_170 Hb_006120_170 Hb_000252_080--Hb_006120_170 Hb_004235_060 Hb_004235_060 Hb_000252_080--Hb_004235_060 Hb_000996_200 Hb_000996_200 Hb_004459_110--Hb_000996_200 Hb_002085_070 Hb_002085_070 Hb_004459_110--Hb_002085_070 Hb_000002_100 Hb_000002_100 Hb_004459_110--Hb_000002_100 Hb_006634_080 Hb_006634_080 Hb_004459_110--Hb_006634_080 Hb_157980_010 Hb_157980_010 Hb_004459_110--Hb_157980_010 Hb_004459_110--Hb_006970_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.09286 1.19839 0.164781 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.158347 0.311215 0.222515 1.29071 0.86336

CAGE analysis