Hb_000169_060

Information

Type -
Description -
Location Contig169: 35439-35861
Sequence    

Annotation

kegg
ID rcu:RCOM_0833840
description hypothetical protein
nr
ID XP_002527045.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SM26
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0833840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_063523_010 0.1805506622 - - -
3 Hb_033045_010 0.1857860543 - - copine, putative [Ricinus communis]
4 Hb_000340_250 0.1930526936 - - PREDICTED: probable galacturonosyltransferase-like 4 [Jatropha curcas]
5 Hb_108551_010 0.1942352118 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006925_060 0.1957816559 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
7 Hb_006970_150 0.1971871383 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
8 Hb_004994_190 0.2100210034 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Jatropha curcas]
9 Hb_187991_010 0.2121386635 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
10 Hb_000265_020 0.2122500198 - - hypothetical protein POPTR_0011s16980g, partial [Populus trichocarpa]
11 Hb_000552_090 0.2127342385 - - hypothetical protein JCGZ_18511 [Jatropha curcas]
12 Hb_000359_280 0.2147765683 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
13 Hb_000289_100 0.2169334035 - - carbonyl reductase, putative [Ricinus communis]
14 Hb_000001_010 0.2173914914 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
15 Hb_000008_080 0.2178889947 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012018_020 0.2179301694 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
17 Hb_001102_270 0.2185516927 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
18 Hb_000836_560 0.2202901107 - - -
19 Hb_000598_020 0.2206022607 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
20 Hb_003337_050 0.2214367029 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_060 Hb_000169_060 Hb_063523_010 Hb_063523_010 Hb_000169_060--Hb_063523_010 Hb_033045_010 Hb_033045_010 Hb_000169_060--Hb_033045_010 Hb_000340_250 Hb_000340_250 Hb_000169_060--Hb_000340_250 Hb_108551_010 Hb_108551_010 Hb_000169_060--Hb_108551_010 Hb_006925_060 Hb_006925_060 Hb_000169_060--Hb_006925_060 Hb_006970_150 Hb_006970_150 Hb_000169_060--Hb_006970_150 Hb_187991_010 Hb_187991_010 Hb_063523_010--Hb_187991_010 Hb_000359_280 Hb_000359_280 Hb_063523_010--Hb_000359_280 Hb_001102_270 Hb_001102_270 Hb_063523_010--Hb_001102_270 Hb_063523_010--Hb_033045_010 Hb_107809_010 Hb_107809_010 Hb_063523_010--Hb_107809_010 Hb_031862_020 Hb_031862_020 Hb_063523_010--Hb_031862_020 Hb_000265_020 Hb_000265_020 Hb_033045_010--Hb_000265_020 Hb_033045_010--Hb_006970_150 Hb_000489_020 Hb_000489_020 Hb_033045_010--Hb_000489_020 Hb_003337_050 Hb_003337_050 Hb_033045_010--Hb_003337_050 Hb_033045_010--Hb_031862_020 Hb_002284_030 Hb_002284_030 Hb_000340_250--Hb_002284_030 Hb_000836_560 Hb_000836_560 Hb_000340_250--Hb_000836_560 Hb_004994_190 Hb_004994_190 Hb_000340_250--Hb_004994_190 Hb_001556_020 Hb_001556_020 Hb_000340_250--Hb_001556_020 Hb_001140_320 Hb_001140_320 Hb_000340_250--Hb_001140_320 Hb_025236_020 Hb_025236_020 Hb_108551_010--Hb_025236_020 Hb_108551_010--Hb_003337_050 Hb_003077_060 Hb_003077_060 Hb_108551_010--Hb_003077_060 Hb_168509_020 Hb_168509_020 Hb_108551_010--Hb_168509_020 Hb_092458_010 Hb_092458_010 Hb_108551_010--Hb_092458_010 Hb_108551_010--Hb_006925_060 Hb_000001_010 Hb_000001_010 Hb_006925_060--Hb_000001_010 Hb_006925_060--Hb_063523_010 Hb_003680_250 Hb_003680_250 Hb_006925_060--Hb_003680_250 Hb_005628_050 Hb_005628_050 Hb_006925_060--Hb_005628_050 Hb_003751_050 Hb_003751_050 Hb_006925_060--Hb_003751_050 Hb_006925_060--Hb_187991_010 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_006970_150--Hb_000265_020 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.2365 0.860748 0.107615 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.179406 0 0 0.837038 0.252161

CAGE analysis