Hb_006446_010

Information

Type -
Description -
Location Contig6446: 1580-3853
Sequence    

Annotation

kegg
ID rcu:RCOM_0605720
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002529807.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID B9SUY8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0605720 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52240: 1790-2351 , PASA_asmbl_52241: 2494-3450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006446_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000126_110 0.1383460767 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
3 Hb_003442_100 0.1549268965 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
4 Hb_001103_020 0.1808567977 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
5 Hb_000983_080 0.1817393419 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
6 Hb_006788_140 0.1882230811 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
7 Hb_001189_110 0.1882967711 - - NAC transcription factor 066 [Jatropha curcas]
8 Hb_116349_040 0.1926804163 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
9 Hb_001146_010 0.1998461666 - - cystathionine gamma-synthase, putative [Ricinus communis]
10 Hb_025708_020 0.2004272616 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_005779_030 0.2021888644 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
12 Hb_000152_330 0.2042532306 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
13 Hb_025708_010 0.2045352996 - - hypothetical protein MTR_1g051060 [Medicago truncatula]
14 Hb_001049_020 0.2065062685 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009193_100 0.2070282094 - - hypothetical protein JCGZ_15709 [Jatropha curcas]
16 Hb_001699_230 0.2087439641 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
17 Hb_008066_070 0.2090300927 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
18 Hb_128589_010 0.2100244871 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
19 Hb_001411_140 0.2110220336 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
20 Hb_007576_200 0.2116186226 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_006446_010 Hb_006446_010 Hb_000126_110 Hb_000126_110 Hb_006446_010--Hb_000126_110 Hb_003442_100 Hb_003442_100 Hb_006446_010--Hb_003442_100 Hb_001103_020 Hb_001103_020 Hb_006446_010--Hb_001103_020 Hb_000983_080 Hb_000983_080 Hb_006446_010--Hb_000983_080 Hb_006788_140 Hb_006788_140 Hb_006446_010--Hb_006788_140 Hb_001189_110 Hb_001189_110 Hb_006446_010--Hb_001189_110 Hb_007904_130 Hb_007904_130 Hb_000126_110--Hb_007904_130 Hb_000126_110--Hb_001103_020 Hb_009193_100 Hb_009193_100 Hb_000126_110--Hb_009193_100 Hb_000126_110--Hb_001189_110 Hb_011512_130 Hb_011512_130 Hb_000126_110--Hb_011512_130 Hb_003442_100--Hb_001189_110 Hb_004899_310 Hb_004899_310 Hb_003442_100--Hb_004899_310 Hb_003442_100--Hb_001103_020 Hb_005779_030 Hb_005779_030 Hb_003442_100--Hb_005779_030 Hb_012317_020 Hb_012317_020 Hb_003442_100--Hb_012317_020 Hb_111051_010 Hb_111051_010 Hb_001103_020--Hb_111051_010 Hb_001103_020--Hb_011512_130 Hb_001103_020--Hb_001189_110 Hb_000983_080--Hb_009193_100 Hb_000983_080--Hb_012317_020 Hb_000699_230 Hb_000699_230 Hb_000983_080--Hb_000699_230 Hb_128589_010 Hb_128589_010 Hb_000983_080--Hb_128589_010 Hb_011872_020 Hb_011872_020 Hb_000983_080--Hb_011872_020 Hb_000059_300 Hb_000059_300 Hb_000983_080--Hb_000059_300 Hb_000019_040 Hb_000019_040 Hb_006788_140--Hb_000019_040 Hb_000987_060 Hb_000987_060 Hb_006788_140--Hb_000987_060 Hb_189208_020 Hb_189208_020 Hb_006788_140--Hb_189208_020 Hb_003175_030 Hb_003175_030 Hb_006788_140--Hb_003175_030 Hb_000976_280 Hb_000976_280 Hb_006788_140--Hb_000976_280 Hb_002097_200 Hb_002097_200 Hb_006788_140--Hb_002097_200 Hb_006643_020 Hb_006643_020 Hb_001189_110--Hb_006643_020 Hb_000426_030 Hb_000426_030 Hb_001189_110--Hb_000426_030 Hb_000975_350 Hb_000975_350 Hb_001189_110--Hb_000975_350 Hb_000302_260 Hb_000302_260 Hb_001189_110--Hb_000302_260 Hb_002042_130 Hb_002042_130 Hb_001189_110--Hb_002042_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.11497 14.517 3.49069 9.83401 0.121674 0.949672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57589 2.87264 8.75306 8.04024 1.61976

CAGE analysis