Hb_003442_100

Information

Type -
Description -
Location Contig3442: 120906-124489
Sequence    

Annotation

kegg
ID rcu:RCOM_0782900
description B-Raf proto-oncogene serine/threonine-protein kinase, putative (EC:2.7.10.1 2.7.10.2)
nr
ID XP_012092398.1
description PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID A0A067JDL4
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_21319 PE=3 SV=1
Gene Ontology
ID GO:0004674
description b-raf proto-oncogene serine threonine-protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35948: 120831-121391 , PASA_asmbl_35950: 123362-124194
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003442_100 0.0 - - PREDICTED: uncharacterized protein LOC105650128 [Jatropha curcas]
2 Hb_001189_110 0.13796607 - - NAC transcription factor 066 [Jatropha curcas]
3 Hb_006446_010 0.1549268965 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_004899_310 0.1559620761 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001103_020 0.1601867403 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
6 Hb_005779_030 0.1736603433 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
7 Hb_012317_020 0.1906213229 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
8 Hb_001146_010 0.1924327755 - - cystathionine gamma-synthase, putative [Ricinus communis]
9 Hb_000162_220 0.1941744431 - - nodulin family protein [Populus trichocarpa]
10 Hb_001049_020 0.1976178726 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000625_090 0.2016813757 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000983_080 0.202127958 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
13 Hb_000975_350 0.2047748715 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
14 Hb_111051_010 0.2050232882 - - Disease resistance protein RGA2, putative [Ricinus communis]
15 Hb_005663_070 0.2056502726 - - dehydrin protein [Manihot esculenta]
16 Hb_034688_020 0.2060828394 - - PREDICTED: uncharacterized protein LOC105642050 [Jatropha curcas]
17 Hb_000126_110 0.206670935 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X3 [Populus euphratica]
18 Hb_003938_160 0.209000182 - - PREDICTED: transcription factor bHLH155 [Jatropha curcas]
19 Hb_002636_080 0.2123590648 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
20 Hb_001146_020 0.2129730643 - - hypothetical protein CISIN_1g013079mg [Citrus sinensis]

Gene co-expression network

sample Hb_003442_100 Hb_003442_100 Hb_001189_110 Hb_001189_110 Hb_003442_100--Hb_001189_110 Hb_006446_010 Hb_006446_010 Hb_003442_100--Hb_006446_010 Hb_004899_310 Hb_004899_310 Hb_003442_100--Hb_004899_310 Hb_001103_020 Hb_001103_020 Hb_003442_100--Hb_001103_020 Hb_005779_030 Hb_005779_030 Hb_003442_100--Hb_005779_030 Hb_012317_020 Hb_012317_020 Hb_003442_100--Hb_012317_020 Hb_006643_020 Hb_006643_020 Hb_001189_110--Hb_006643_020 Hb_000426_030 Hb_000426_030 Hb_001189_110--Hb_000426_030 Hb_000975_350 Hb_000975_350 Hb_001189_110--Hb_000975_350 Hb_000302_260 Hb_000302_260 Hb_001189_110--Hb_000302_260 Hb_002042_130 Hb_002042_130 Hb_001189_110--Hb_002042_130 Hb_000126_110 Hb_000126_110 Hb_006446_010--Hb_000126_110 Hb_006446_010--Hb_001103_020 Hb_000983_080 Hb_000983_080 Hb_006446_010--Hb_000983_080 Hb_006788_140 Hb_006788_140 Hb_006446_010--Hb_006788_140 Hb_006446_010--Hb_001189_110 Hb_004899_310--Hb_005779_030 Hb_000162_220 Hb_000162_220 Hb_004899_310--Hb_000162_220 Hb_111051_010 Hb_111051_010 Hb_004899_310--Hb_111051_010 Hb_000407_070 Hb_000407_070 Hb_004899_310--Hb_000407_070 Hb_004453_070 Hb_004453_070 Hb_004899_310--Hb_004453_070 Hb_001103_020--Hb_000126_110 Hb_001103_020--Hb_111051_010 Hb_011512_130 Hb_011512_130 Hb_001103_020--Hb_011512_130 Hb_001103_020--Hb_001189_110 Hb_009646_010 Hb_009646_010 Hb_005779_030--Hb_009646_010 Hb_000059_300 Hb_000059_300 Hb_005779_030--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_005779_030--Hb_000110_300 Hb_000465_260 Hb_000465_260 Hb_005779_030--Hb_000465_260 Hb_001818_060 Hb_001818_060 Hb_005779_030--Hb_001818_060 Hb_128589_010 Hb_128589_010 Hb_005779_030--Hb_128589_010 Hb_000699_230 Hb_000699_230 Hb_012317_020--Hb_000699_230 Hb_012317_020--Hb_000983_080 Hb_001726_110 Hb_001726_110 Hb_012317_020--Hb_001726_110 Hb_000061_120 Hb_000061_120 Hb_012317_020--Hb_000061_120 Hb_000625_090 Hb_000625_090 Hb_012317_020--Hb_000625_090 Hb_003038_140 Hb_003038_140 Hb_012317_020--Hb_003038_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03759 4.12535 0.654118 4.40037 0.0554434 0.487709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.13764 1.61136 1.81069 2.73375 0.387236

CAGE analysis